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Journal Abstract Search

478 related items for PubMed ID: 29346586

  • 1. PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.
    Krawczyk PS, Lipinski L, Dziembowski A.
    Nucleic Acids Res; 2018 Apr 06; 46(6):e35. PubMed ID: 29346586
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  • 2. Plasmid detection and assembly in genomic and metagenomic data sets.
    Antipov D, Raiko M, Lapidus A, Pevzner PA.
    Genome Res; 2019 Jun 06; 29(6):961-968. PubMed ID: 31048319
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  • 5. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands.
    Maguire F, Jia B, Gray KL, Lau WYV, Beiko RG, Brinkman FSL.
    Microb Genom; 2020 Oct 06; 6(10):. PubMed ID: 33001022
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  • 7. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
    Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G.
    Nat Biotechnol; 2018 Jan 06; 36(1):61-69. PubMed ID: 29227468
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  • 10. Identification of the conjugative and mobilizable plasmid fragments in the plasmidome using sequence signatures.
    Fang Z, Zhou H.
    Microb Genom; 2020 Nov 06; 6(11):. PubMed ID: 33074084
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  • 11. Metagenomic signatures of 86 microbial and viral metagenomes.
    Willner D, Thurber RV, Rohwer F.
    Environ Microbiol; 2009 Jul 06; 11(7):1752-66. PubMed ID: 19302541
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  • 12. Removing contaminants from databases of draft genomes.
    Lu J, Salzberg SL.
    PLoS Comput Biol; 2018 Jun 06; 14(6):e1006277. PubMed ID: 29939994
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  • 13. Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow?
    Hilpert C, Bricheux G, Debroas D.
    Brief Bioinform; 2021 May 20; 22(3):. PubMed ID: 32427283
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  • 15. PlasClass improves plasmid sequence classification.
    Pellow D, Mizrahi I, Shamir R.
    PLoS Comput Biol; 2020 Apr 20; 16(4):e1007781. PubMed ID: 32243433
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  • 16. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
    Wu M, Scott AJ.
    Bioinformatics; 2012 Apr 01; 28(7):1033-4. PubMed ID: 22332237
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  • 19. MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.
    Wang TY, Su CH, Tsai HK.
    Bioinformatics; 2011 Dec 15; 27(24):3341-7. PubMed ID: 22016405
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