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Journal Abstract Search

336 related items for PubMed ID: 29494574

  • 1. Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online.
    Forsberg EM, Huan T, Rinehart D, Benton HP, Warth B, Hilmers B, Siuzdak G.
    Nat Protoc; 2018 Apr; 13(4):633-651. PubMed ID: 29494574
    [Abstract] [Full Text] [Related]

  • 2.
    ; . PubMed ID:
    [No Abstract] [Full Text] [Related]

  • 3. Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology.
    Huan T, Palermo A, Ivanisevic J, Rinehart D, Edler D, Phommavongsay T, Benton HP, Guijas C, Domingo-Almenara X, Warth B, Siuzdak G.
    Anal Chem; 2018 Jul 17; 90(14):8396-8403. PubMed ID: 29893550
    [Abstract] [Full Text] [Related]

  • 4.
    Kobeissy FH, Wolahan SM, Hirt D, Glenn TC.
    ; 2015 Jul 17. PubMed ID: 26269925
    [Abstract] [Full Text] [Related]

  • 5. XCMS Online: a web-based platform to process untargeted metabolomic data.
    Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G.
    Anal Chem; 2012 Jun 05; 84(11):5035-9. PubMed ID: 22533540
    [Abstract] [Full Text] [Related]

  • 6. Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis.
    Chong J, Wishart DS, Xia J.
    Curr Protoc Bioinformatics; 2019 Dec 05; 68(1):e86. PubMed ID: 31756036
    [Abstract] [Full Text] [Related]

  • 7. El-MAVEN: A Fast, Robust, and User-Friendly Mass Spectrometry Data Processing Engine for Metabolomics.
    Agrawal S, Kumar S, Sehgal R, George S, Gupta R, Poddar S, Jha A, Pathak S.
    Methods Mol Biol; 2019 Dec 05; 1978():301-321. PubMed ID: 31119671
    [Abstract] [Full Text] [Related]

  • 8. Interactive XCMS Online: simplifying advanced metabolomic data processing and subsequent statistical analyses.
    Gowda H, Ivanisevic J, Johnson CH, Kurczy ME, Benton HP, Rinehart D, Nguyen T, Ray J, Kuehl J, Arevalo B, Westenskow PD, Wang J, Arkin AP, Deutschbauer AM, Patti GJ, Siuzdak G.
    Anal Chem; 2014 Jul 15; 86(14):6931-9. PubMed ID: 24934772
    [Abstract] [Full Text] [Related]

  • 9. Optimizing XCMS parameters for GC-MS metabolomics data processing: a case study.
    Dos Santos EKP, Canuto GAB.
    Metabolomics; 2023 Mar 28; 19(4):26. PubMed ID: 36976375
    [Abstract] [Full Text] [Related]

  • 10. 3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data.
    Kuo TC, Tian TF, Tseng YJ.
    BMC Syst Biol; 2013 Jul 23; 7():64. PubMed ID: 23875761
    [Abstract] [Full Text] [Related]

  • 11. Single-platform 'multi-omic' profiling: unified mass spectrometry and computational workflows for integrative proteomics-metabolomics analysis.
    Blum BC, Mousavi F, Emili A.
    Mol Omics; 2018 Oct 08; 14(5):307-319. PubMed ID: 30211418
    [Abstract] [Full Text] [Related]

  • 12. Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.
    Karp PD, Midford PE, Billington R, Kothari A, Krummenacker M, Latendresse M, Ong WK, Subhraveti P, Caspi R, Fulcher C, Keseler IM, Paley SM.
    Brief Bioinform; 2021 Jan 18; 22(1):109-126. PubMed ID: 31813964
    [Abstract] [Full Text] [Related]

  • 13. Automated Comparative Metabolite Profiling of Large LC-ESIMS Data Sets in an ACD/MS Workbook Suite Add-in, and Data Clustering on a New Open-Source Web Platform FreeClust.
    Božičević A, Dobrzyński M, De Bie H, Gafner F, Garo E, Hamburger M.
    Anal Chem; 2017 Dec 05; 89(23):12682-12689. PubMed ID: 29087694
    [Abstract] [Full Text] [Related]

  • 14. X13CMS: global tracking of isotopic labels in untargeted metabolomics.
    Huang X, Chen YJ, Cho K, Nikolskiy I, Crawford PA, Patti GJ.
    Anal Chem; 2014 Feb 04; 86(3):1632-9. PubMed ID: 24397582
    [Abstract] [Full Text] [Related]

  • 15. Current approaches and outstanding challenges of functional annotation of metabolites: a comprehensive review.
    Nguyen QH, Nguyen H, Oh EC, Nguyen T.
    Brief Bioinform; 2024 Sep 23; 25(6):. PubMed ID: 39397425
    [Abstract] [Full Text] [Related]

  • 16. High-throughput ultra-performance liquid chromatography-mass spectrometry characterization of metabolites guided by a bioinformatics program.
    Zhang AH, Wang P, Sun H, Yan GL, Han Y, Wang XJ.
    Mol Biosyst; 2013 Sep 23; 9(9):2259-65. PubMed ID: 23821129
    [Abstract] [Full Text] [Related]

  • 17. Overview of Experimental Methods and Study Design in Metabolomics, and Statistical and Pathway Considerations.
    Barnes S.
    Methods Mol Biol; 2020 Sep 23; 2104():1-10. PubMed ID: 31953809
    [Abstract] [Full Text] [Related]

  • 18. Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses.
    Montenegro-Burke JR, Phommavongsay T, Aisporna AE, Huan T, Rinehart D, Forsberg E, Poole FL, Thorgersen MP, Adams MW, Krantz G, Fields MW, Northen TR, Robbins PD, Niedernhofer LJ, Lairson L, Benton HP, Siuzdak G.
    Anal Chem; 2016 Oct 04; 88(19):9753-9758. PubMed ID: 27560777
    [Abstract] [Full Text] [Related]

  • 19. Using the IDEOM Workflow for LCMS-Based Metabolomics Studies of Drug Mechanisms.
    Srivastava A, Creek DJ.
    Methods Mol Biol; 2020 Oct 04; 2104():419-445. PubMed ID: 31953829
    [Abstract] [Full Text] [Related]

  • 20. Optimization of XCMS parameters for LC-MS metabolomics: an assessment of automated versus manual tuning and its effect on the final results.
    Albóniga OE, González O, Alonso RM, Xu Y, Goodacre R.
    Metabolomics; 2020 Jan 10; 16(1):14. PubMed ID: 31925557
    [Abstract] [Full Text] [Related]

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