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Journal Abstract Search

314 related items for PubMed ID: 29560823

  • 1. Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach.
    Peng J, Zhang X, Hui W, Lu J, Li Q, Liu S, Shang X.
    BMC Syst Biol; 2018 Mar 19; 12(Suppl 2):18. PubMed ID: 29560823
    [Abstract] [Full Text] [Related]

  • 2. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
    Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J.
    BMC Bioinformatics; 2015 Feb 14; 16():44. PubMed ID: 25886899
    [Abstract] [Full Text] [Related]

  • 3. GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness.
    Liu M, Thomas PD.
    BMC Bioinformatics; 2019 Mar 27; 20(1):155. PubMed ID: 30917779
    [Abstract] [Full Text] [Related]

  • 4. Measure the Semantic Similarity of GO Terms Using Aggregate Information Content.
    Song X, Li L, Srimani PK, Yu PS, Wang JZ.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Mar 27; 11(3):468-76. PubMed ID: 26356015
    [Abstract] [Full Text] [Related]

  • 5. TopoICSim: a new semantic similarity measure based on gene ontology.
    Ehsani R, Drabløs F.
    BMC Bioinformatics; 2016 Jul 29; 17(1):296. PubMed ID: 27473391
    [Abstract] [Full Text] [Related]

  • 6. Interspecies gene function prediction using semantic similarity.
    Yu G, Luo W, Fu G, Wang J.
    BMC Syst Biol; 2016 Dec 23; 10(Suppl 4):121. PubMed ID: 28155711
    [Abstract] [Full Text] [Related]

  • 7. A relation based measure of semantic similarity for Gene Ontology annotations.
    Sheehan B, Quigley A, Gaudin B, Dobson S.
    BMC Bioinformatics; 2008 Nov 04; 9():468. PubMed ID: 18983678
    [Abstract] [Full Text] [Related]

  • 8. Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations.
    Ikram N, Qadir MA, Afzal MT.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Nov 04; 15(3):905-912. PubMed ID: 28436885
    [Abstract] [Full Text] [Related]

  • 9. Improving automatic GO annotation with semantic similarity.
    Sarker B, Khare N, Devignes MD, Aridhi S.
    BMC Bioinformatics; 2022 Dec 12; 23(Suppl 2):433. PubMed ID: 36510133
    [Abstract] [Full Text] [Related]

  • 10. Semantic Similarity in the Gene Ontology.
    Pesquita C.
    Methods Mol Biol; 2017 Dec 12; 1446():161-173. PubMed ID: 27812942
    [Abstract] [Full Text] [Related]

  • 11. Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph.
    Dutta P, Basu S, Kundu M.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Dec 12; 15(3):839-849. PubMed ID: 28371781
    [Abstract] [Full Text] [Related]

  • 12. Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery.
    Mazandu GK, Chimusa ER, Mulder NJ.
    Brief Bioinform; 2017 Sep 01; 18(5):886-901. PubMed ID: 27473066
    [Abstract] [Full Text] [Related]

  • 13. InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk.
    Cheng L, Jiang Y, Ju H, Sun J, Peng J, Zhou M, Hu Y.
    BMC Genomics; 2018 Jan 19; 19(Suppl 1):919. PubMed ID: 29363423
    [Abstract] [Full Text] [Related]

  • 14. A graph-based semantic similarity measure for the gene ontology.
    Alvarez MA, Yan C.
    J Bioinform Comput Biol; 2011 Dec 19; 9(6):681-95. PubMed ID: 22084008
    [Abstract] [Full Text] [Related]

  • 15. Using Semantic Similarities and csbl.go for Analyzing Microarray Data.
    Ovaska K.
    Methods Mol Biol; 2016 Dec 19; 1375():105-16. PubMed ID: 25971911
    [Abstract] [Full Text] [Related]

  • 16. A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool.
    Mazandu GK, Chimusa ER, Mbiyavanga M, Mulder NJ.
    Bioinformatics; 2016 Feb 01; 32(3):477-9. PubMed ID: 26476781
    [Abstract] [Full Text] [Related]

  • 17. InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology.
    Peng J, Li H, Liu Y, Juan L, Jiang Q, Wang Y, Chen J.
    BMC Genomics; 2016 Aug 31; 17 Suppl 5(Suppl 5):530. PubMed ID: 27586009
    [Abstract] [Full Text] [Related]

  • 18. Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty.
    Yang H, Nepusz T, Paccanaro A.
    Bioinformatics; 2012 May 15; 28(10):1383-9. PubMed ID: 22522134
    [Abstract] [Full Text] [Related]

  • 19. GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms.
    Zhao C, Wang Z.
    Sci Rep; 2018 Oct 10; 8(1):15107. PubMed ID: 30305653
    [Abstract] [Full Text] [Related]

  • 20. IntelliGO: a new vector-based semantic similarity measure including annotation origin.
    Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.
    BMC Bioinformatics; 2010 Dec 01; 11():588. PubMed ID: 21122125
    [Abstract] [Full Text] [Related]

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