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Journal Abstract Search

876 related items for PubMed ID: 29621972

  • 1. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
    Dang LT, Tondl M, Chiu MHH, Revote J, Paten B, Tano V, Tokolyi A, Besse F, Quaife-Ryan G, Cumming H, Drvodelic MJ, Eichenlaub MP, Hallab JC, Stolper JS, Rossello FJ, Bogoyevitch MA, Jans DA, Nim HT, Porrello ER, Hudson JE, Ramialison M.
    BMC Genomics; 2018 Apr 05; 19(1):238. PubMed ID: 29621972
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  • 5. DMINDA: an integrated web server for DNA motif identification and analyses.
    Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y.
    Nucleic Acids Res; 2014 Jul 05; 42(Web Server issue):W12-9. PubMed ID: 24753419
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  • 9. SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data.
    Peng Y, Maxwell AS, Barker ND, Laird JG, Kennedy AJ, Wang N, Zhang C, Gong P.
    BMC Bioinformatics; 2014 Jul 05; 15 Suppl 11(Suppl 11):S10. PubMed ID: 25349885
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  • 10. MEME-ChIP: motif analysis of large DNA datasets.
    Machanick P, Bailey TL.
    Bioinformatics; 2011 Jun 15; 27(12):1696-7. PubMed ID: 21486936
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  • 11. BML: a versatile web server for bipartite motif discovery.
    Vahed M, Vahed M, Garmire LX.
    Brief Bioinform; 2022 Jan 17; 23(1):. PubMed ID: 34974623
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  • 12. BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.
    De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, Dhoedt B, Vandepoele K, Fostier J.
    Bioinformatics; 2015 Dec 01; 31(23):3758-66. PubMed ID: 26254488
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  • 13. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
    Pavesi G, Mereghetti P, Zambelli F, Stefani M, Mauri G, Pesole G.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W566-70. PubMed ID: 16845071
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  • 14. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M, Tabari ES, Su Z.
    BMC Genomics; 2014 Dec 02; 15():1047. PubMed ID: 25442502
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  • 15. SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.
    Wang W, Hu W, Hou F, Hu P, Wei Z.
    J Med Genet; 2012 Dec 02; 49(12):753-5. PubMed ID: 23024288
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  • 16. SeqTailor: a user-friendly webserver for the extraction of DNA or protein sequences from next-generation sequencing data.
    Zhang P, Boisson B, Stenson PD, Cooper DN, Casanova JL, Abel L, Itan Y.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W623-W631. PubMed ID: 31045209
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  • 17. fcScan: a versatile tool to cluster combinations of sites using genomic coordinates.
    El-Kurdi A, Khalil GA, Khazen G, Khoueiry P.
    BMC Bioinformatics; 2020 May 19; 21(1):194. PubMed ID: 32429868
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  • 18. SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences.
    Agostini F, Cirillo D, Ponti RD, Tartaglia GG.
    BMC Genomics; 2014 Oct 23; 15(1):925. PubMed ID: 25341390
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  • 19. ConSite: web-based prediction of regulatory elements using cross-species comparison.
    Sandelin A, Wasserman WW, Lenhard B.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W249-52. PubMed ID: 15215389
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  • 20. Motif-based analysis of large nucleotide data sets using MEME-ChIP.
    Ma W, Noble WS, Bailey TL.
    Nat Protoc; 2014 Jul 01; 9(6):1428-50. PubMed ID: 24853928
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