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Journal Abstract Search

887 related items for PubMed ID: 29745830

  • 1. MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions.
    Hayashi T, Matsuzaki Y, Yanagisawa K, Ohue M, Akiyama Y.
    BMC Bioinformatics; 2018 May 08; 19(Suppl 4):62. PubMed ID: 29745830
    [Abstract] [Full Text] [Related]

  • 2. MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data.
    Ohue M, Matsuzaki Y, Uchikoga N, Ishida T, Akiyama Y.
    Protein Pept Lett; 2014 May 08; 21(8):766-78. PubMed ID: 23855673
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  • 3. MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.
    Ohue M, Shimoda T, Suzuki S, Matsuzaki Y, Ishida T, Akiyama Y.
    Bioinformatics; 2014 Nov 15; 30(22):3281-3. PubMed ID: 25100686
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  • 4. HAPPI: an online database of comprehensive human annotated and predicted protein interactions.
    Chen JY, Mamidipalli S, Huan T.
    BMC Genomics; 2009 Jul 07; 10 Suppl 1(Suppl 1):S16. PubMed ID: 19594875
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  • 5. MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.
    Matsuzaki Y, Uchikoga N, Ohue M, Shimoda T, Sato T, Ishida T, Akiyama Y.
    Source Code Biol Med; 2013 Sep 03; 8(1):18. PubMed ID: 24004986
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  • 10. PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology.
    Gioutlakis A, Klapa MI, Moschonas NK.
    PLoS One; 2017 Sep 03; 12(10):e0186039. PubMed ID: 29023571
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  • 11. INTERSPIA: a web application for exploring the dynamics of protein-protein interactions among multiple species.
    Kwon D, Lee D, Kim J, Lee J, Sim M, Kim J.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W89-W94. PubMed ID: 29746660
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  • 12. PPI finder: a mining tool for human protein-protein interactions.
    He M, Wang Y, Li W.
    PLoS One; 2009 Jul 02; 4(2):e4554. PubMed ID: 19234603
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  • 14. Wiki-pi: a web-server of annotated human protein-protein interactions to aid in discovery of protein function.
    Orii N, Ganapathiraju MK.
    PLoS One; 2012 Jul 02; 7(11):e49029. PubMed ID: 23209562
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  • 15. The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.
    Suzuki H, Saito R, Kanamori M, Kai C, Schönbach C, Nagashima T, Hosaka J, Hayashizaki Y.
    Genome Res; 2003 Jun 02; 13(6B):1534-41. PubMed ID: 12819152
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  • 16. Protein complex prediction via dense subgraphs and false positive analysis.
    Hernandez C, Mella C, Navarro G, Olivera-Nappa A, Araya J.
    PLoS One; 2017 Jun 02; 12(9):e0183460. PubMed ID: 28937982
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  • 18. In silico prediction of physical protein interactions and characterization of interactome orphans.
    Kotlyar M, Pastrello C, Pivetta F, Lo Sardo A, Cumbaa C, Li H, Naranian T, Niu Y, Ding Z, Vafaee F, Broackes-Carter F, Petschnigg J, Mills GB, Jurisicova A, Stagljar I, Maestro R, Jurisica I.
    Nat Methods; 2015 Jan 02; 12(1):79-84. PubMed ID: 25402006
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  • 19. FPPI: Fusarium graminearum protein-protein interaction database.
    Zhao XM, Zhang XW, Tang WH, Chen L.
    J Proteome Res; 2009 Oct 02; 8(10):4714-21. PubMed ID: 19673500
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  • 20. NLDB: a database for 3D protein-ligand interactions in enzymatic reactions.
    Murakami Y, Omori S, Kinoshita K.
    J Struct Funct Genomics; 2016 Dec 02; 17(4):101-110. PubMed ID: 27530928
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