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Journal Abstract Search

228 related items for PubMed ID: 29846641

  • 1. HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry.
    Yan Y, Tao H, Huang SY.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W423-W431. PubMed ID: 29846641
    [Abstract] [Full Text] [Related]

  • 2. HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
    Zhou P, Jin B, Li H, Huang SY.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W443-W450. PubMed ID: 29746661
    [Abstract] [Full Text] [Related]

  • 3. HDOCK: a web server for protein-protein and protein-DNA/RNA docking based on a hybrid strategy.
    Yan Y, Zhang D, Zhou P, Li B, Huang SY.
    Nucleic Acids Res; 2017 Jul 03; 45(W1):W365-W373. PubMed ID: 28521030
    [Abstract] [Full Text] [Related]

  • 4. COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking.
    Wu Q, Peng Z, Zhang Y, Yang J.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W438-W442. PubMed ID: 29846643
    [Abstract] [Full Text] [Related]

  • 5. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
    Quignot C, Rey J, Yu J, Tufféry P, Guerois R, Andreani J.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W408-W416. PubMed ID: 29741647
    [Abstract] [Full Text] [Related]

  • 6. HawkDock: a web server to predict and analyze the protein-protein complex based on computational docking and MM/GBSA.
    Weng G, Wang E, Wang Z, Liu H, Zhu F, Li D, Hou T.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W322-W330. PubMed ID: 31106357
    [Abstract] [Full Text] [Related]

  • 7. Identification and visualization of protein binding regions with the ArDock server.
    Reille S, Garnier M, Robert X, Gouet P, Martin J, Launay G.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W417-W422. PubMed ID: 29905873
    [Abstract] [Full Text] [Related]

  • 8. GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure.
    Baek M, Park T, Heo L, Park C, Seok C.
    Nucleic Acids Res; 2017 Jul 03; 45(W1):W320-W324. PubMed ID: 28387820
    [Abstract] [Full Text] [Related]

  • 9. HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.
    He J, Wang J, Tao H, Xiao Y, Huang SY.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W35-W42. PubMed ID: 31114906
    [Abstract] [Full Text] [Related]

  • 10. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
    Pallara C, Jiménez-García B, Romero M, Moal IH, Fernández-Recio J.
    Proteins; 2017 Mar 02; 85(3):487-496. PubMed ID: 27701776
    [Abstract] [Full Text] [Related]

  • 11. New additions to the ClusPro server motivated by CAPRI.
    Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D.
    Proteins; 2017 Mar 02; 85(3):435-444. PubMed ID: 27936493
    [Abstract] [Full Text] [Related]

  • 12. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
    El Houasli M, Maigret B, Devignes MD, Ghoorah AW, Grudinin S, Ritchie DW.
    Proteins; 2017 Mar 02; 85(3):463-469. PubMed ID: 27701764
    [Abstract] [Full Text] [Related]

  • 13. Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10.
    Berchanski A, Segal D, Eisenstein M.
    Proteins; 2005 Aug 01; 60(2):202-6. PubMed ID: 15981250
    [Abstract] [Full Text] [Related]

  • 14. The HDOCK server for integrated protein-protein docking.
    Yan Y, Tao H, He J, Huang SY.
    Nat Protoc; 2020 May 01; 15(5):1829-1852. PubMed ID: 32269383
    [Abstract] [Full Text] [Related]

  • 15. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y, Wen Z, Wang X, Huang SY.
    Proteins; 2017 Mar 01; 85(3):497-512. PubMed ID: 28026062
    [Abstract] [Full Text] [Related]

  • 16. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
    Lee H, Baek M, Lee GR, Park S, Seok C.
    Proteins; 2017 Mar 01; 85(3):399-407. PubMed ID: 27770545
    [Abstract] [Full Text] [Related]

  • 17. Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server.
    Baek M, Park T, Heo L, Seok C.
    Methods Mol Biol; 2020 Mar 01; 2165():127-137. PubMed ID: 32621222
    [Abstract] [Full Text] [Related]

  • 18. Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein-protein interactions.
    Roy AA, Dhawanjewar AS, Sharma P, Singh G, Madhusudhan MS.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W331-W337. PubMed ID: 31114890
    [Abstract] [Full Text] [Related]

  • 19. GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters.
    Park T, Baek M, Lee H, Seok C.
    J Comput Chem; 2019 Oct 15; 40(27):2413-2417. PubMed ID: 31173387
    [Abstract] [Full Text] [Related]

  • 20. Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.
    Yan Y, He J, Feng Y, Lin P, Tao H, Huang SY.
    Proteins; 2020 Aug 15; 88(8):1055-1069. PubMed ID: 31994779
    [Abstract] [Full Text] [Related]

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