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Journal Abstract Search

314 related items for PubMed ID: 29994130

  • 1. Multi-Factored Gene-Gene Proximity Measures Exploiting Biological Knowledge Extracted from Gene Ontology: Application in Gene Clustering.
    Acharya S, Saha S, Pradhan P.
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):207-219. PubMed ID: 29994130
    [Abstract] [Full Text] [Related]

  • 2. TopoICSim: a new semantic similarity measure based on gene ontology.
    Ehsani R, Drabløs F.
    BMC Bioinformatics; 2016 Jul 29; 17(1):296. PubMed ID: 27473391
    [Abstract] [Full Text] [Related]

  • 3. Novel symmetry-based gene-gene dissimilarity measures utilizing Gene Ontology: Application in gene clustering.
    Acharya S, Saha S, Pradhan P.
    Gene; 2018 Dec 30; 679():341-351. PubMed ID: 30184472
    [Abstract] [Full Text] [Related]

  • 4. GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness.
    Liu M, Thomas PD.
    BMC Bioinformatics; 2019 Mar 27; 20(1):155. PubMed ID: 30917779
    [Abstract] [Full Text] [Related]

  • 5. IntelliGO: a new vector-based semantic similarity measure including annotation origin.
    Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.
    BMC Bioinformatics; 2010 Dec 01; 11():588. PubMed ID: 21122125
    [Abstract] [Full Text] [Related]

  • 6. Influence of the go-based semantic similarity measures in multi-objective gene clustering algorithm performance.
    Parraga-Alava J, Inostroza-Ponta M.
    J Bioinform Comput Biol; 2020 Dec 01; 18(6):2050038. PubMed ID: 33148094
    [Abstract] [Full Text] [Related]

  • 7. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
    Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J.
    BMC Bioinformatics; 2015 Feb 14; 16():44. PubMed ID: 25886899
    [Abstract] [Full Text] [Related]

  • 8. DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures.
    Mazandu GK, Mulder NJ.
    BMC Bioinformatics; 2013 Sep 25; 14():284. PubMed ID: 24067102
    [Abstract] [Full Text] [Related]

  • 9. A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool.
    Mazandu GK, Chimusa ER, Mbiyavanga M, Mulder NJ.
    Bioinformatics; 2016 Feb 01; 32(3):477-9. PubMed ID: 26476781
    [Abstract] [Full Text] [Related]

  • 10. Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph.
    Dutta P, Basu S, Kundu M.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Feb 01; 15(3):839-849. PubMed ID: 28371781
    [Abstract] [Full Text] [Related]

  • 11. Measure the Semantic Similarity of GO Terms Using Aggregate Information Content.
    Song X, Li L, Srimani PK, Yu PS, Wang JZ.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Feb 01; 11(3):468-76. PubMed ID: 26356015
    [Abstract] [Full Text] [Related]

  • 12. A relation based measure of semantic similarity for Gene Ontology annotations.
    Sheehan B, Quigley A, Gaudin B, Dobson S.
    BMC Bioinformatics; 2008 Nov 04; 9():468. PubMed ID: 18983678
    [Abstract] [Full Text] [Related]

  • 13. Interspecies gene function prediction using semantic similarity.
    Yu G, Luo W, Fu G, Wang J.
    BMC Syst Biol; 2016 Dec 23; 10(Suppl 4):121. PubMed ID: 28155711
    [Abstract] [Full Text] [Related]

  • 14. A New Path Based Hybrid Measure for Gene Ontology Similarity.
    Bandyopadhyay S, Mallick K.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Dec 23; 11(1):116-27. PubMed ID: 26355512
    [Abstract] [Full Text] [Related]

  • 15. Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI.
    Bettembourg C, Diot C, Dameron O.
    PLoS One; 2015 Dec 23; 10(7):e0133579. PubMed ID: 26230274
    [Abstract] [Full Text] [Related]

  • 16. GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms.
    Zhao C, Wang Z.
    Sci Rep; 2018 Oct 10; 8(1):15107. PubMed ID: 30305653
    [Abstract] [Full Text] [Related]

  • 17. A new method to measure the semantic similarity of GO terms.
    Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF.
    Bioinformatics; 2007 May 15; 23(10):1274-81. PubMed ID: 17344234
    [Abstract] [Full Text] [Related]

  • 18. simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes.
    Pesaranghader A, Matwin S, Sokolova M, Beiko RG.
    Bioinformatics; 2016 May 01; 32(9):1380-7. PubMed ID: 26708333
    [Abstract] [Full Text] [Related]

  • 19. Handling Big Data Scalability in Biological Domain Using Parallel and Distributed Processing: A Case of Three Biological Semantic Similarity Measures.
    Almasoud AM, Al-Khalifa HS, Al-Salman AS.
    Biomed Res Int; 2019 May 01; 2019():6750296. PubMed ID: 30809545
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  • 20. An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology.
    Jain S, Bader GD.
    BMC Bioinformatics; 2010 Nov 15; 11():562. PubMed ID: 21078182
    [Abstract] [Full Text] [Related]

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