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Journal Abstract Search

385 related items for PubMed ID: 30105017

  • 21. A bioinformatics pipeline to build a knowledge database for in silico antibody engineering.
    Zhao S, Lu J.
    Mol Immunol; 2011 Apr; 48(8):1019-26. PubMed ID: 21310488
    [Abstract] [Full Text] [Related]

  • 22. High-Throughput Sequencing of the Expressed Torafugu (Takifugu rubripes) Antibody Sequences Distinguishes IgM and IgT Repertoires and Reveals Evidence of Convergent Evolution.
    Fu X, Sun J, Tan E, Shimizu K, Reza MS, Watabe S, Asakawa S.
    Front Immunol; 2018 Apr; 9():251. PubMed ID: 29515575
    [Abstract] [Full Text] [Related]

  • 23. Filtering Next-Generation Sequencing of the Ig Gene Repertoire Data Using Antibody Structural Information.
    Kovaltsuk A, Krawczyk K, Kelm S, Snowden J, Deane CM.
    J Immunol; 2018 Dec 15; 201(12):3694-3704. PubMed ID: 30397033
    [Abstract] [Full Text] [Related]

  • 24. Using bioinformatics tools for the sequence analysis of immunoglobulins and T cell receptors.
    Lefranc MP.
    Curr Protoc Immunol; 2006 Mar 15; Appendix 1():Appendix 1W. PubMed ID: 18432961
    [Abstract] [Full Text] [Related]

  • 25. Reconstructing and mining the B cell repertoire with ImmunediveRsity.
    Cortina-Ceballos B, Godoy-Lozano EE, Sámano-Sánchez H, Aguilar-Salgado A, Velasco-Herrera Mdel C, Vargas-Chávez C, Velázquez-Ramírez D, Romero G, Moreno J, Téllez-Sosa J, Martínez-Barnetche J.
    MAbs; 2015 Mar 15; 7(3):516-24. PubMed ID: 25875140
    [Abstract] [Full Text] [Related]

  • 26. Purpose-Built Immunoinformatics for BcR IG/TR Repertoire Data Analysis.
    Galigalidou C, Zaragoza-Infante L, Chatzidimitriou A, Stamatopoulos K, Psomopoulos F, Agathangelidis A.
    Methods Mol Biol; 2022 Mar 15; 2453():585-603. PubMed ID: 35622343
    [Abstract] [Full Text] [Related]

  • 27. ASAP 2: a pipeline and web server to analyze marker gene amplicon sequencing data automatically and consistently.
    Tian R, Imanian B.
    BMC Bioinformatics; 2022 Jan 06; 23(1):27. PubMed ID: 34991446
    [Abstract] [Full Text] [Related]

  • 28. ViCloD, an interactive web tool for visualizing B cell repertoires and analyzing intraclonal diversities: application to human B-cell tumors.
    Jeusset L, Abdollahi N, Verny T, Armand M, De Septenville AL, Davi F, Bernardes JS.
    NAR Genom Bioinform; 2023 Jun 06; 5(2):lqad064. PubMed ID: 37388820
    [Abstract] [Full Text] [Related]

  • 29. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
    Christley S, Scarborough W, Salinas E, Rounds WH, Toby IT, Fonner JM, Levin MK, Kim M, Mock SA, Jordan C, Ostmeyer J, Buntzman A, Rubelt F, Davila ML, Monson NL, Scheuermann RH, Cowell LG.
    Front Immunol; 2018 Jun 06; 9():976. PubMed ID: 29867956
    [Abstract] [Full Text] [Related]

  • 30. A comprehensive profiling of T- and B-lymphocyte receptor repertoires from a Chinese-origin rhesus macaque by high-throughput sequencing.
    Fu L, Li X, Zhang W, Wang C, Wu J, Yang H, Wang J, Liu X.
    PLoS One; 2017 Jun 06; 12(8):e0182733. PubMed ID: 28813462
    [Abstract] [Full Text] [Related]

  • 31. Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data.
    Gupta NT, Adams KD, Briggs AW, Timberlake SC, Vigneault F, Kleinstein SH.
    J Immunol; 2017 Mar 15; 198(6):2489-2499. PubMed ID: 28179494
    [Abstract] [Full Text] [Related]

  • 32. AncesTree: An interactive immunoglobulin lineage tree visualizer.
    Foglierini M, Pappas L, Lanzavecchia A, Corti D, Perez L.
    PLoS Comput Biol; 2020 Jul 15; 16(7):e1007731. PubMed ID: 32649725
    [Abstract] [Full Text] [Related]

  • 33. Practical guidelines for B-cell receptor repertoire sequencing analysis.
    Yaari G, Kleinstein SH.
    Genome Med; 2015 Nov 20; 7():121. PubMed ID: 26589402
    [Abstract] [Full Text] [Related]

  • 34. OGRDB: a reference database of inferred immune receptor genes.
    Lees W, Busse CE, Corcoran M, Ohlin M, Scheepers C, Matsen FA, Yaari G, Watson CT, AIRR Community, Collins A, Shepherd AJ.
    Nucleic Acids Res; 2020 Jan 08; 48(D1):D964-D970. PubMed ID: 31566225
    [Abstract] [Full Text] [Related]

  • 35. Next generation sequencing reveals novel alterations in B-cell heavy chain receptor repertoires associated with acute-on-chronic liver failure.
    Yan Q, Wang L, Lai L, Liu S, Chen H, Zhang J, Dai Y, Sui W.
    Int J Mol Med; 2019 Jan 08; 43(1):243-255. PubMed ID: 30365073
    [Abstract] [Full Text] [Related]

  • 36. Highly sensitive and unbiased approach for elucidating antibody repertoires.
    Lin SG, Ba Z, Du Z, Zhang Y, Hu J, Alt FW.
    Proc Natl Acad Sci U S A; 2016 Jul 12; 113(28):7846-51. PubMed ID: 27354528
    [Abstract] [Full Text] [Related]

  • 37. Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia.
    Blachly JS, Ruppert AS, Zhao W, Long S, Flynn J, Flinn I, Jones J, Maddocks K, Andritsos L, Ghia EM, Rassenti LZ, Kipps TJ, de la Chapelle A, Byrd JC.
    Proc Natl Acad Sci U S A; 2015 Apr 07; 112(14):4322-7. PubMed ID: 25787252
    [Abstract] [Full Text] [Related]

  • 38. sciReptor: analysis of single-cell level immunoglobulin repertoires.
    Imkeller K, Arndt PF, Wardemann H, Busse CE.
    BMC Bioinformatics; 2016 Feb 04; 17():67. PubMed ID: 26847109
    [Abstract] [Full Text] [Related]

  • 39. LymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins.
    Yu Y, Ceredig R, Seoighe C.
    Nucleic Acids Res; 2016 Feb 29; 44(4):e31. PubMed ID: 26446988
    [Abstract] [Full Text] [Related]

  • 40. Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting.
    Khan TA, Friedensohn S, Gorter de Vries AR, Straszewski J, Ruscheweyh HJ, Reddy ST.
    Sci Adv; 2016 Mar 29; 2(3):e1501371. PubMed ID: 26998518
    [Abstract] [Full Text] [Related]

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