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Journal Abstract Search

404 related items for PubMed ID: 30340111

  • 1. Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene.
    Mota-Gutierrez J, Ferrocino I, Rantsiou K, Cocolin L.
    Int J Food Microbiol; 2019 Feb 02; 290():132-140. PubMed ID: 30340111
    [Abstract] [Full Text] [Related]

  • 2. Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity.
    De Filippis F, Laiola M, Blaiotta G, Ercolini D.
    Appl Environ Microbiol; 2017 Sep 01; 83(17):. PubMed ID: 28625991
    [Abstract] [Full Text] [Related]

  • 3. Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing.
    Taylor DL, Walters WA, Lennon NJ, Bochicchio J, Krohn A, Caporaso JG, Pennanen T.
    Appl Environ Microbiol; 2016 Dec 15; 82(24):7217-7226. PubMed ID: 27736792
    [Abstract] [Full Text] [Related]

  • 4. Comparison of sequencing the D2 region of the large subunit ribosomal RNA gene (MicroSEQ®) versus the internal transcribed spacer (ITS) regions using two public databases for identification of common and uncommon clinically relevant fungal species.
    Arbefeville S, Harris A, Ferrieri P.
    J Microbiol Methods; 2017 Sep 15; 140():40-46. PubMed ID: 28647582
    [Abstract] [Full Text] [Related]

  • 5. A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys.
    Mueller RC, Gallegos-Graves LV, Kuske CR.
    FEMS Microbiol Ecol; 2016 Feb 15; 92(2):. PubMed ID: 26656064
    [Abstract] [Full Text] [Related]

  • 6. New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA.
    Asemaninejad A, Weerasuriya N, Gloor GB, Lindo Z, Thorn RG.
    PLoS One; 2016 Feb 15; 11(7):e0159043. PubMed ID: 27391306
    [Abstract] [Full Text] [Related]

  • 7. Exploring the accuracy of amplicon-based internal transcribed spacer markers for a fungal community.
    Li S, Deng Y, Wang Z, Zhang Z, Kong X, Zhou W, Yi Y, Qu Y.
    Mol Ecol Resour; 2020 Jan 15; 20(1):170-184. PubMed ID: 31599091
    [Abstract] [Full Text] [Related]

  • 8. A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms.
    Banos S, Lentendu G, Kopf A, Wubet T, Glöckner FO, Reich M.
    BMC Microbiol; 2018 Nov 20; 18(1):190. PubMed ID: 30458701
    [Abstract] [Full Text] [Related]

  • 9. Evaluation of different PCR primers for denaturing gradient gel electrophoresis (DGGE) analysis of fungal community structure in traditional fermentation starters used for Hong Qu glutinous rice wine.
    Lv XC, Jiang YJ, Liu J, Guo WL, Liu ZB, Zhang W, Rao PF, Ni L.
    Int J Food Microbiol; 2017 Aug 16; 255():58-65. PubMed ID: 28595086
    [Abstract] [Full Text] [Related]

  • 10. Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies.
    Op De Beeck M, Lievens B, Busschaert P, Declerck S, Vangronsveld J, Colpaert JV.
    PLoS One; 2014 Aug 16; 9(6):e97629. PubMed ID: 24933453
    [Abstract] [Full Text] [Related]

  • 11. Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil.
    Anderson IC, Campbell CD, Prosser JI.
    Environ Microbiol; 2003 Jan 16; 5(1):36-47. PubMed ID: 12542711
    [Abstract] [Full Text] [Related]

  • 12. A fungal mock community control for amplicon sequencing experiments.
    Bakker MG.
    Mol Ecol Resour; 2018 May 16; 18(3):541-556. PubMed ID: 29389073
    [Abstract] [Full Text] [Related]

  • 13. Introducing ribosomal tandem repeat barcoding for fungi.
    Wurzbacher C, Larsson E, Bengtsson-Palme J, Van den Wyngaert S, Svantesson S, Kristiansson E, Kagami M, Nilsson RH.
    Mol Ecol Resour; 2019 Jan 16; 19(1):118-127. PubMed ID: 30240145
    [Abstract] [Full Text] [Related]

  • 14. Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions of Rhizophagus irregularis and Gigaspora margarita is high and isolate-dependent.
    Thiéry O, Vasar M, Jairus T, Davison J, Roux C, Kivistik PA, Metspalu A, Milani L, Saks Ü, Moora M, Zobel M, Öpik M.
    Mol Ecol; 2016 Jun 16; 25(12):2816-32. PubMed ID: 27092961
    [Abstract] [Full Text] [Related]

  • 15. ITS1 versus ITS2 as DNA metabarcodes for fungi.
    Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H.
    Mol Ecol Resour; 2013 Mar 16; 13(2):218-24. PubMed ID: 23350562
    [Abstract] [Full Text] [Related]

  • 16. Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples.
    Reynolds NK, Jusino MA, Stajich JE, Smith ME.
    Mol Ecol Resour; 2022 Apr 16; 22(3):1065-1085. PubMed ID: 34695878
    [Abstract] [Full Text] [Related]

  • 17. Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis.
    Smit E, Leeflang P, Glandorf B, van Elsas JD, Wernars K.
    Appl Environ Microbiol; 1999 Jun 16; 65(6):2614-21. PubMed ID: 10347051
    [Abstract] [Full Text] [Related]

  • 18. Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.
    Heeger F, Bourne EC, Baschien C, Yurkov A, Bunk B, Spröer C, Overmann J, Mazzoni CJ, Monaghan MT.
    Mol Ecol Resour; 2018 Nov 16; 18(6):1500-1514. PubMed ID: 30106226
    [Abstract] [Full Text] [Related]

  • 19. Assessment of Passive Traps Combined with High-Throughput Sequencing To Study Airborne Fungal Communities.
    Aguayo J, Fourrier-Jeandel C, Husson C, Ioos R.
    Appl Environ Microbiol; 2018 Jun 01; 84(11):. PubMed ID: 29572213
    [Abstract] [Full Text] [Related]

  • 20. Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing.
    Yang RH, Su JH, Shang JJ, Wu YY, Li Y, Bao DP, Yao YJ.
    PLoS One; 2018 Jun 01; 13(10):e0206428. PubMed ID: 30359454
    [Abstract] [Full Text] [Related]

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