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Journal Abstract Search

229 related items for PubMed ID: 30520123

  • 1. Gene ontology improves template selection in comparative protein docking.
    Hadarovich A, Anishchenko I, Tuzikov AV, Kundrotas PJ, Vakser IA.
    Proteins; 2019 Mar; 87(3):245-253. PubMed ID: 30520123
    [Abstract] [Full Text] [Related]

  • 2. Structural modeling of protein complexes: Current capabilities and challenges.
    Dapkūnas J, Olechnovič K, Venclovas Č.
    Proteins; 2019 Dec; 87(12):1222-1232. PubMed ID: 31294859
    [Abstract] [Full Text] [Related]

  • 3. Structural quality of unrefined models in protein docking.
    Anishchenko I, Kundrotas PJ, Vakser IA.
    Proteins; 2017 Jan; 85(1):39-45. PubMed ID: 27756103
    [Abstract] [Full Text] [Related]

  • 4. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
    Chakravarty D, McElfresh GW, Kundrotas PJ, Vakser IA.
    Proteins; 2020 Aug; 88(8):1070-1081. PubMed ID: 31994759
    [Abstract] [Full Text] [Related]

  • 5. Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions.
    Peterson LX, Shin WH, Kim H, Kihara D.
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):311-320. PubMed ID: 28845596
    [Abstract] [Full Text] [Related]

  • 6. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y, Wen Z, Wang X, Huang SY.
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [Abstract] [Full Text] [Related]

  • 7. Global and local structural similarity in protein-protein complexes: implications for template-based docking.
    Kundrotas PJ, Vakser IA.
    Proteins; 2013 Dec; 81(12):2137-42. PubMed ID: 23946125
    [Abstract] [Full Text] [Related]

  • 8. Structural templates for comparative protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 Sep; 83(9):1563-70. PubMed ID: 25488330
    [Abstract] [Full Text] [Related]

  • 9. Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.
    Porter KA, Padhorny D, Desta I, Ignatov M, Beglov D, Kotelnikov S, Sun Z, Alekseenko A, Anishchenko I, Cong Q, Ovchinnikov S, Baker D, Vajda S, Kozakov D.
    Proteins; 2019 Dec; 87(12):1241-1248. PubMed ID: 31444975
    [Abstract] [Full Text] [Related]

  • 10. Protein docking using case-based reasoning.
    Ghoorah AW, Devignes MD, Smaïl-Tabbone M, Ritchie DW.
    Proteins; 2013 Dec; 81(12):2150-8. PubMed ID: 24123156
    [Abstract] [Full Text] [Related]

  • 11. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
    Vangone A, Rodrigues JP, Xue LC, van Zundert GC, Geng C, Kurkcuoglu Z, Nellen M, Narasimhan S, Karaca E, van Dijk M, Melquiond AS, Visscher KM, Trellet M, Kastritis PL, Bonvin AM.
    Proteins; 2017 Mar; 85(3):417-423. PubMed ID: 27802573
    [Abstract] [Full Text] [Related]

  • 12. Defining the limits of homology modeling in information-driven protein docking.
    Rodrigues JP, Melquiond AS, Karaca E, Trellet M, van Dijk M, van Zundert GC, Schmitz C, de Vries SJ, Bordogna A, Bonati L, Kastritis PL, Bonvin AM.
    Proteins; 2013 Dec; 81(12):2119-28. PubMed ID: 23913867
    [Abstract] [Full Text] [Related]

  • 13. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
    Quignot C, Rey J, Yu J, Tufféry P, Guerois R, Andreani J.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W408-W416. PubMed ID: 29741647
    [Abstract] [Full Text] [Related]

  • 14. Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function.
    Kundrotas PJ, Anishchenko I, Badal VD, Das M, Dauzhenka T, Vakser IA.
    Proteins; 2018 Mar 02; 86 Suppl 1(Suppl 1):302-310. PubMed ID: 28905425
    [Abstract] [Full Text] [Related]

  • 15. A computational framework for modeling functional protein-protein interactions.
    Pal A, Pal D, Mitra P.
    Proteins; 2021 Oct 02; 89(10):1353-1364. PubMed ID: 34076296
    [Abstract] [Full Text] [Related]

  • 16. What method to use for protein-protein docking?
    Porter KA, Desta I, Kozakov D, Vajda S.
    Curr Opin Struct Biol; 2019 Apr 02; 55():1-7. PubMed ID: 30711743
    [Abstract] [Full Text] [Related]

  • 17. MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.
    Zhang C, Zheng W, Freddolino PL, Zhang Y.
    J Mol Biol; 2018 Jul 20; 430(15):2256-2265. PubMed ID: 29534977
    [Abstract] [Full Text] [Related]

  • 18. Template-based modeling of diverse protein interactions in CAPRI rounds 38-45.
    Dapkūnas J, Kairys V, Olechnovič K, Venclovas Č.
    Proteins; 2020 Aug 20; 88(8):939-947. PubMed ID: 31697420
    [Abstract] [Full Text] [Related]

  • 19. Exploring the relationship between hub proteins and drug targets based on GO and intrinsic disorder.
    Fu Y, Guo Y, Wang Y, Luo J, Pu X, Li M, Zhang Z.
    Comput Biol Chem; 2015 Jun 20; 56():41-8. PubMed ID: 25854804
    [Abstract] [Full Text] [Related]

  • 20. Assessing the applicability of template-based protein docking in the twilight zone.
    Negroni J, Mosca R, Aloy P.
    Structure; 2014 Sep 02; 22(9):1356-1362. PubMed ID: 25156427
    [Abstract] [Full Text] [Related]

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