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Journal Abstract Search

312 related items for PubMed ID: 30627209

  • 1. Insights into the Molecular Mechanisms of Protein-Ligand Interactions by Molecular Docking and Molecular Dynamics Simulation: A Case of Oligopeptide Binding Protein.
    Fu Y, Zhao J, Chen Z.
    Comput Math Methods Med; 2018; 2018():3502514. PubMed ID: 30627209
    [Abstract] [Full Text] [Related]

  • 2. Diversity-guided Lamarckian random drift particle swarm optimization for flexible ligand docking.
    Li C, Sun J, Palade V.
    BMC Bioinformatics; 2020 Jul 06; 21(1):286. PubMed ID: 32631216
    [Abstract] [Full Text] [Related]

  • 3. Random drift particle swarm optimisation algorithm for highly flexible protein-ligand docking.
    Fu Y, Chen Z, Sun J.
    J Theor Biol; 2018 Nov 14; 457():180-189. PubMed ID: 30170044
    [Abstract] [Full Text] [Related]

  • 4. AcquaAlta: a directional approach to the solvation of ligand-protein complexes.
    Rossato G, Ernst B, Vedani A, Smiesko M.
    J Chem Inf Model; 2011 Aug 22; 51(8):1867-81. PubMed ID: 21714532
    [Abstract] [Full Text] [Related]

  • 5. Structural model and ligand interactions of the Xanthomonas axonopodis pv. citri oligopeptide-binding protein.
    Moutran A, Balan A, Ferreira LC, Giorgetti A, Tramontano A, Ferreira RC.
    Genet Mol Res; 2007 Dec 11; 6(4):1169-77. PubMed ID: 18273810
    [Abstract] [Full Text] [Related]

  • 6. The structural basis of sequence-independent peptide binding by OppA protein.
    Tame JR, Murshudov GN, Dodson EJ, Neil TK, Dodson GG, Higgins CF, Wilkinson AJ.
    Science; 1994 Jun 10; 264(5165):1578-81. PubMed ID: 8202710
    [Abstract] [Full Text] [Related]

  • 7. Docking with AutoDock4.
    Bitencourt-Ferreira G, Pintro VO, de Azevedo WF.
    Methods Mol Biol; 2019 Jun 10; 2053():125-148. PubMed ID: 31452103
    [Abstract] [Full Text] [Related]

  • 8. Structural and dynamical aspects of Streptococcus gordonii FabH through molecular docking and MD simulations.
    Shamim A, Abbasi SW, Azam SS.
    J Mol Graph Model; 2015 Jul 10; 60():180-96. PubMed ID: 26059477
    [Abstract] [Full Text] [Related]

  • 9. PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking.
    Ng MC, Fong S, Siu SW.
    J Bioinform Comput Biol; 2015 Jun 10; 13(3):1541007. PubMed ID: 25800162
    [Abstract] [Full Text] [Related]

  • 10. PLHINT: A knowledge-driven computational approach based on the intermolecular H bond interactions at the protein-ligand interface from docking solutions.
    Kumar SP.
    J Mol Graph Model; 2018 Jan 10; 79():194-212. PubMed ID: 29241118
    [Abstract] [Full Text] [Related]

  • 11.
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  • 12. SODOCK: swarm optimization for highly flexible protein-ligand docking.
    Chen HM, Liu BF, Huang HL, Hwang SF, Ho SY.
    J Comput Chem; 2007 Jan 30; 28(2):612-23. PubMed ID: 17186483
    [Abstract] [Full Text] [Related]

  • 13.
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  • 14. Peptide binding in OppA, the crystal structures of the periplasmic oligopeptide binding protein in the unliganded form and in complex with lysyllysine.
    Sleigh SH, Tame JR, Dodson EJ, Wilkinson AJ.
    Biochemistry; 1997 Aug 12; 36(32):9747-58. PubMed ID: 9245406
    [Abstract] [Full Text] [Related]

  • 15. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V, Günther R.
    Chem Biol Drug Des; 2007 Dec 12; 70(6):475-84. PubMed ID: 17986206
    [Abstract] [Full Text] [Related]

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  • 17. Picture story. One cavity fits all.
    Surridge C.
    Nat Struct Biol; 1994 Aug 12; 1(8):511. PubMed ID: 7664077
    [No Abstract] [Full Text] [Related]

  • 18. Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins.
    Kurkcuoglu Z, Doruker P.
    PLoS One; 2016 Aug 12; 11(6):e0158063. PubMed ID: 27348230
    [Abstract] [Full Text] [Related]

  • 19. Ligand-Receptor Interactions and Drug Design.
    Syriopoulou A, Markopoulos I, Tzakos AG, Mavromoustakos T.
    Methods Mol Biol; 2021 Aug 12; 2266():89-104. PubMed ID: 33759122
    [Abstract] [Full Text] [Related]

  • 20. Multiple receptor conformers based molecular docking study of fluorine enhanced ethionamide with mycobacterium enoyl ACP reductase (InhA).
    Khan AM, Shawon J, Halim MA.
    J Mol Graph Model; 2017 Oct 12; 77():386-398. PubMed ID: 28957755
    [Abstract] [Full Text] [Related]

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