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Journal Abstract Search

486 related items for PubMed ID: 30709819

  • 1. In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification.
    Wu Y, Lau HK, Lee T, Lau DK, Payne J.
    Appl Environ Microbiol; 2019 Apr 01; 85(7):. PubMed ID: 30709819
    [Abstract] [Full Text] [Related]

  • 2. Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli.
    van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD.
    J Clin Microbiol; 2018 Oct 01; 56(10):. PubMed ID: 30021824
    [Abstract] [Full Text] [Related]

  • 3. Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping.
    Zhang X, Payne M, Nguyen T, Kaur S, Lan R.
    Microb Genom; 2021 Dec 01; 7(12):. PubMed ID: 34889728
    [Abstract] [Full Text] [Related]

  • 4. Whole genome sequencing of Streptococcus pneumoniae: development, evaluation and verification of targets for serogroup and serotype prediction using an automated pipeline.
    Kapatai G, Sheppard CL, Al-Shahib A, Litt DJ, Underwood AP, Harrison TG, Fry NK.
    PeerJ; 2016 Dec 01; 4():e2477. PubMed ID: 27672516
    [Abstract] [Full Text] [Related]

  • 5. Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences.
    Chattaway MA, Schaefer U, Tewolde R, Dallman TJ, Jenkins C.
    J Clin Microbiol; 2017 Feb 01; 55(2):616-623. PubMed ID: 27974538
    [Abstract] [Full Text] [Related]

  • 6. Historical, current, and emerging tools for identification and serotyping of Shigella.
    Halimeh FB, Rafei R, Osman M, Kassem II, Diene SM, Dabboussi F, Rolain JM, Hamze M.
    Braz J Microbiol; 2021 Dec 01; 52(4):2043-2055. PubMed ID: 34524650
    [Abstract] [Full Text] [Related]

  • 7. SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data.
    Zhang S, den Bakker HC, Li S, Chen J, Dinsmore BA, Lane C, Lauer AC, Fields PI, Deng X.
    Appl Environ Microbiol; 2019 Dec 01; 85(23):. PubMed ID: 31540993
    [Abstract] [Full Text] [Related]

  • 8. Determining Streptococcus suis serotype from short-read whole-genome sequencing data.
    Athey TB, Teatero S, Lacouture S, Takamatsu D, Gottschalk M, Fittipaldi N.
    BMC Microbiol; 2016 Jul 22; 16(1):162. PubMed ID: 27449127
    [Abstract] [Full Text] [Related]

  • 9. Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.
    Joensen KG, Tetzschner AM, Iguchi A, Aarestrup FM, Scheutz F.
    J Clin Microbiol; 2015 Aug 22; 53(8):2410-26. PubMed ID: 25972421
    [Abstract] [Full Text] [Related]

  • 10. In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages.
    Ingle DJ, Valcanis M, Kuzevski A, Tauschek M, Inouye M, Stinear T, Levine MM, Robins-Browne RM, Holt KE.
    Microb Genom; 2016 Jul 22; 2(7):e000064. PubMed ID: 28348859
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  • 12. ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data.
    Bessonov K, Laing C, Robertson J, Yong I, Ziebell K, Gannon VPJ, Nichani A, Arya G, Nash JHE, Christianson S.
    Microb Genom; 2021 Dec 22; 7(12):. PubMed ID: 34860150
    [Abstract] [Full Text] [Related]

  • 13. ShigaPass: an in silico tool predicting Shigella serotypes from whole-genome sequencing assemblies.
    Yassine I, Hansen EE, Lefèvre S, Ruckly C, Carle I, Lejay-Collin M, Fabre L, Rafei R, Pardos de la Gandara M, Daboussi F, Shahin A, Weill FX.
    Microb Genom; 2023 Mar 22; 9(3):. PubMed ID: 36951906
    [Abstract] [Full Text] [Related]

  • 14. Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow.
    Ventola E, Bogaerts B, De Keersmaecker SCJ, Vanneste K, Roosens NHC, Mattheus W, Ceyssens PJ.
    Microbiologyopen; 2019 Aug 22; 8(8):e00807. PubMed ID: 30924299
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  • 16. Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing.
    Grinevich D, Harden L, Thakur S, Callahan B.
    mSystems; 2024 Mar 19; 9(3):e0075723. PubMed ID: 38319092
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  • 19. In silico species identification and serotyping for Cronobacter isolates by use of whole-genome sequencing data.
    Wang L, Zhu W, Lu G, Wu P, Wei Y, Su Y, Jia T, Li L, Guo X, Huang M, Yang Q, Huang D, Liu B.
    Int J Food Microbiol; 2021 Nov 16; 358():109405. PubMed ID: 34563883
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