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Journal Abstract Search

192 related items for PubMed ID: 30736004

  • 1. Accurately Detecting Protein Complexes by Graph Embedding and Combining Functions with Interactions.
    Yao H, Shi Y, Guan J, Zhou S.
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(3):777-787. PubMed ID: 30736004
    [Abstract] [Full Text] [Related]

  • 2. Denoising Protein-Protein interaction network via variational graph auto-encoder for protein complex detection.
    Yao H, Guan J, Liu T.
    J Bioinform Comput Biol; 2020 Jun; 18(3):2040010. PubMed ID: 32698725
    [Abstract] [Full Text] [Related]

  • 3. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.
    Xu B, Guan J.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Jun; 11(4):616-27. PubMed ID: 26356332
    [Abstract] [Full Text] [Related]

  • 4. DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding.
    Meng X, Xiang J, Zheng R, Wu FX, Li M.
    IEEE/ACM Trans Comput Biol Bioinform; 2022 Jun; 19(3):1592-1602. PubMed ID: 33417563
    [Abstract] [Full Text] [Related]

  • 5. Protein Complexes Detection Based on Semi-Supervised Network Embedding Model.
    Zhu J, Zheng Z, Yang M, Fung GPC, Huang C.
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Jun; 18(2):797-803. PubMed ID: 31581089
    [Abstract] [Full Text] [Related]

  • 6. A New Method for Detecting Protein Complexes based on the Three Node Cliques.
    Zhang W, Zou X.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Jun; 12(4):879-86. PubMed ID: 26357329
    [Abstract] [Full Text] [Related]

  • 7. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
    Ou-Yang L, Yan H, Zhang XF.
    BMC Bioinformatics; 2017 Dec 01; 18(Suppl 13):463. PubMed ID: 29219066
    [Abstract] [Full Text] [Related]

  • 8. From communities to protein complexes: A local community detection algorithm on PPI networks.
    Dilmaghani S, Brust MR, Ribeiro CHC, Kieffer E, Danoy G, Bouvry P.
    PLoS One; 2022 Dec 01; 17(1):e0260484. PubMed ID: 35085263
    [Abstract] [Full Text] [Related]

  • 9. Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding.
    Zhu L, Deng SP, You ZH, Huang DS.
    IEEE/ACM Trans Comput Biol Bioinform; 2017 Dec 01; 14(2):345-352. PubMed ID: 28368812
    [Abstract] [Full Text] [Related]

  • 10. The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks.
    Ibrahim ZM, Ngom A.
    BMC Bioinformatics; 2015 Dec 01; 16 Suppl 4(Suppl 4):S3. PubMed ID: 25734691
    [Abstract] [Full Text] [Related]

  • 11. Predicting overlapping protein complexes based on core-attachment and a local modularity structure.
    Wang R, Liu G, Wang C, Su L, Sun L.
    BMC Bioinformatics; 2018 Aug 22; 19(1):305. PubMed ID: 30134824
    [Abstract] [Full Text] [Related]

  • 12. Identification of Protein Complexes by Using a Spatial and Temporal Active Protein Interaction Network.
    Li M, Meng X, Zheng R, Wu FX, Li Y, Pan Y, Wang J.
    IEEE/ACM Trans Comput Biol Bioinform; 2020 Aug 22; 17(3):817-827. PubMed ID: 28885159
    [Abstract] [Full Text] [Related]

  • 13. Protein complex prediction via dense subgraphs and false positive analysis.
    Hernandez C, Mella C, Navarro G, Olivera-Nappa A, Araya J.
    PLoS One; 2017 Aug 22; 12(9):e0183460. PubMed ID: 28937982
    [Abstract] [Full Text] [Related]

  • 14. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering.
    Theofilatos K, Pavlopoulou N, Papasavvas C, Likothanassis S, Dimitrakopoulos C, Georgopoulos E, Moschopoulos C, Mavroudi S.
    Artif Intell Med; 2015 Mar 22; 63(3):181-9. PubMed ID: 25765008
    [Abstract] [Full Text] [Related]

  • 15. Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.
    Liu X, Yang Z, Sang S, Zhou Z, Wang L, Zhang Y, Lin H, Wang J, Xu B.
    BMC Bioinformatics; 2018 Sep 21; 19(1):332. PubMed ID: 30241459
    [Abstract] [Full Text] [Related]

  • 16. Detecting overlapping protein complexes by rough-fuzzy clustering in protein-protein interaction networks.
    Wu H, Gao L, Dong J, Yang X.
    PLoS One; 2014 Sep 21; 9(3):e91856. PubMed ID: 24642838
    [Abstract] [Full Text] [Related]

  • 17. Complex Prediction in Large PPI Networks Using Expansion and Stripe of Core Cliques.
    Sahoo TR, Vipsita S, Patra S.
    Interdiscip Sci; 2023 Sep 21; 15(3):331-348. PubMed ID: 36306022
    [Abstract] [Full Text] [Related]

  • 18. CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations.
    Xu Y, Zhou J, Zhou S, Guan J.
    BMC Syst Biol; 2017 Dec 21; 11(Suppl 7):135. PubMed ID: 29322927
    [Abstract] [Full Text] [Related]

  • 19. Detection of protein complexes from multiple protein interaction networks using graph embedding.
    Liu X, Yang Z, Sang S, Lin H, Wang J, Xu B.
    Artif Intell Med; 2019 May 21; 96():107-115. PubMed ID: 31164203
    [Abstract] [Full Text] [Related]

  • 20. Predicting overlapping protein complexes from weighted protein interaction graphs by gradually expanding dense neighborhoods.
    Dimitrakopoulos C, Theofilatos K, Pegkas A, Likothanassis S, Mavroudi S.
    Artif Intell Med; 2016 Jul 21; 71():62-9. PubMed ID: 27506132
    [Abstract] [Full Text] [Related]

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