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Journal Abstract Search

465 related items for PubMed ID: 31029085

  • 1. Topological and functional comparison of community detection algorithms in biological networks.
    Rahiminejad S, Maurya MR, Subramaniam S.
    BMC Bioinformatics; 2019 Apr 27; 20(1):212. PubMed ID: 31029085
    [Abstract] [Full Text] [Related]

  • 2. Protein complex prediction for large protein protein interaction networks with the Core&Peel method.
    Pellegrini M, Baglioni M, Geraci F.
    BMC Bioinformatics; 2016 Nov 08; 17(Suppl 12):372. PubMed ID: 28185552
    [Abstract] [Full Text] [Related]

  • 3. Hidden information revealed by optimal community structure from a protein-complex bipartite network improves protein function prediction.
    Lee J, Lee J.
    PLoS One; 2013 Nov 08; 8(4):e60372. PubMed ID: 23577106
    [Abstract] [Full Text] [Related]

  • 4. MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.
    Srihari S, Ning K, Leong HW.
    BMC Bioinformatics; 2010 Oct 12; 11():504. PubMed ID: 20939868
    [Abstract] [Full Text] [Related]

  • 5. From communities to protein complexes: A local community detection algorithm on PPI networks.
    Dilmaghani S, Brust MR, Ribeiro CHC, Kieffer E, Danoy G, Bouvry P.
    PLoS One; 2022 Oct 12; 17(1):e0260484. PubMed ID: 35085263
    [Abstract] [Full Text] [Related]

  • 6. In search of the biological significance of modular structures in protein networks.
    Wang Z, Zhang J.
    PLoS Comput Biol; 2007 Jun 12; 3(6):e107. PubMed ID: 17542644
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  • 7. DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding.
    Meng X, Xiang J, Zheng R, Wu FX, Li M.
    IEEE/ACM Trans Comput Biol Bioinform; 2022 Jun 12; 19(3):1592-1602. PubMed ID: 33417563
    [Abstract] [Full Text] [Related]

  • 8. Protein complex detection in PPI networks based on data integration and supervised learning method.
    Yu F, Yang Z, Hu X, Sun Y, Lin H, Wang J.
    BMC Bioinformatics; 2015 Jun 12; 16 Suppl 12(Suppl 12):S3. PubMed ID: 26329886
    [Abstract] [Full Text] [Related]

  • 9. An overlapping module identification method in protein-protein interaction networks.
    Wang X, Li L, Cheng Y.
    BMC Bioinformatics; 2012 May 08; 13 Suppl 7(Suppl 7):S4. PubMed ID: 22595001
    [Abstract] [Full Text] [Related]

  • 10. A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity.
    Lei C, Ruan J.
    Bioinformatics; 2013 Feb 01; 29(3):355-64. PubMed ID: 23235927
    [Abstract] [Full Text] [Related]

  • 11. A Central Edge Selection Based Overlapping Community Detection Algorithm for the Detection of Overlapping Structures in Protein⁻Protein Interaction Networks.
    Zhang F, Ma A, Wang Z, Ma Q, Liu B, Huang L, Wang Y.
    Molecules; 2018 Oct 13; 23(10):. PubMed ID: 30322177
    [Abstract] [Full Text] [Related]

  • 12. C-element: a new clustering algorithm to find high quality functional modules in PPI networks.
    Ghasemi M, Rahgozar M, Bidkhori G, Masoudi-Nejad A.
    PLoS One; 2013 Oct 13; 8(9):e72366. PubMed ID: 24039752
    [Abstract] [Full Text] [Related]

  • 13. Network topological reordering revealing systemic patterns in yeast protein interaction networks.
    Wu X, Pandey R, Chen JY.
    Annu Int Conf IEEE Eng Med Biol Soc; 2009 Oct 13; 2009():6954-7. PubMed ID: 19964716
    [Abstract] [Full Text] [Related]

  • 14. Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction.
    Stojanova D, Ceci M, Malerba D, Dzeroski S.
    BMC Bioinformatics; 2013 Sep 26; 14():285. PubMed ID: 24070402
    [Abstract] [Full Text] [Related]

  • 15. Distance-wise pathway discovery from protein-protein interaction networks weighted by semantic similarity.
    Jaromerska S, Praus P, Cho YR.
    J Bioinform Comput Biol; 2014 Feb 26; 12(1):1450004. PubMed ID: 24467762
    [Abstract] [Full Text] [Related]

  • 16. Identifying protein complex by integrating characteristic of core-attachment into dynamic PPI network.
    Shen X, Yi L, Jiang X, He T, Yang J, Xie W, Hu P, Hu X.
    PLoS One; 2017 Feb 26; 12(10):e0186134. PubMed ID: 29045465
    [Abstract] [Full Text] [Related]

  • 17. Link community detection using generative model and nonnegative matrix factorization.
    He D, Jin D, Baquero C, Liu D.
    PLoS One; 2014 Feb 26; 9(1):e86899. PubMed ID: 24489803
    [Abstract] [Full Text] [Related]

  • 18. Predicting protein functions by using unbalanced bi-random walk algorithm on protein-protein interaction network and functional interrelationship network.
    Peng W, Wang J, Chen L, Zhong J, Zhang Z, Pan Y.
    Curr Protein Pept Sci; 2014 Feb 26; 15(6):529-39. PubMed ID: 25059324
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  • 19. Detangling PPI networks to uncover functionally meaningful clusters.
    Hall-Swan S, Crawford J, Newman R, Cowen LJ.
    BMC Syst Biol; 2018 Mar 21; 12(Suppl 3):24. PubMed ID: 29589565
    [Abstract] [Full Text] [Related]

  • 20. Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model.
    Jeong H, Qian X, Yoon BJ.
    BMC Bioinformatics; 2016 Oct 06; 17(Suppl 13):395. PubMed ID: 27766938
    [Abstract] [Full Text] [Related]

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