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Journal Abstract Search

247 related items for PubMed ID: 31048319

  • 21. Removing contaminants from databases of draft genomes.
    Lu J, Salzberg SL.
    PLoS Comput Biol; 2018 Jun; 14(6):e1006277. PubMed ID: 29939994
    [Abstract] [Full Text] [Related]

  • 22. Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d'Ivoire: a proof-of-concept study.
    Schneeberger PHH, Becker SL, Pothier JF, Duffy B, N'Goran EK, Beuret C, Frey JE, Utzinger J.
    Infect Genet Evol; 2016 Jun; 40():389-397. PubMed ID: 26391184
    [Abstract] [Full Text] [Related]

  • 23. [A review on the bioinformatics pipelines for metagenomic research].
    Ye DD, Fan MM, Guan Q, Chen HJ, Ma ZS.
    Dongwuxue Yanjiu; 2012 Dec; 33(6):574-85. PubMed ID: 23266976
    [Abstract] [Full Text] [Related]

  • 24. Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences.
    Sharma AK, Gupta A, Kumar S, Dhakan DB, Sharma VK.
    Genomics; 2015 Jul; 106(1):1-6. PubMed ID: 25863333
    [Abstract] [Full Text] [Related]

  • 25. Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes.
    Yang Y, Jiang XT, Zhang T.
    PLoS One; 2014 Jul; 9(10):e110947. PubMed ID: 25347677
    [Abstract] [Full Text] [Related]

  • 26. Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant Genes.
    Jonsson V, Österlund T, Nerman O, Kristiansson E.
    J Comput Biol; 2017 Apr; 24(4):311-326. PubMed ID: 27892712
    [Abstract] [Full Text] [Related]

  • 27. PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.
    Fang Z, Tan J, Wu S, Li M, Xu C, Xie Z, Zhu H.
    Gigascience; 2019 Jun 01; 8(6):. PubMed ID: 31220250
    [Abstract] [Full Text] [Related]

  • 28. Metagenome Assembly and Contig Assignment.
    Zhang Q.
    Methods Mol Biol; 2018 Jun 01; 1849():179-192. PubMed ID: 30298255
    [Abstract] [Full Text] [Related]

  • 29. 3CAC: improving the classification of phages and plasmids in metagenomic assemblies using assembly graphs.
    Pu L, Shamir R.
    Bioinformatics; 2022 Sep 16; 38(Suppl_2):ii56-ii61. PubMed ID: 36124804
    [Abstract] [Full Text] [Related]

  • 30. Alignment-free visualization of metagenomic data by nonlinear dimension reduction.
    Laczny CC, Pinel N, Vlassis N, Wilmes P.
    Sci Rep; 2014 Mar 31; 4():4516. PubMed ID: 24682077
    [Abstract] [Full Text] [Related]

  • 31. Construction of Small-Insert and Large-Insert Metagenomic Libraries.
    Simon C, Daniel R.
    Methods Mol Biol; 2017 Mar 31; 1539():1-12. PubMed ID: 27900680
    [Abstract] [Full Text] [Related]

  • 32. eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.
    Cantalapiedra CP, Hernández-Plaza A, Letunic I, Bork P, Huerta-Cepas J.
    Mol Biol Evol; 2021 Dec 09; 38(12):5825-5829. PubMed ID: 34597405
    [Abstract] [Full Text] [Related]

  • 33. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T, Haque MM, Reddy C, Mande SS.
    PLoS One; 2015 Dec 09; 10(11):e0142102. PubMed ID: 26561344
    [Abstract] [Full Text] [Related]

  • 34. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets.
    Reddy RM, Mohammed MH, Mande SS.
    Genomics; 2014 Dec 09; 103(2-3):161-8. PubMed ID: 24607570
    [Abstract] [Full Text] [Related]

  • 35.
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  • 36. A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes.
    Gkanogiannis A, Gazut S, Salanoubat M, Kanj S, Brüls T.
    BMC Bioinformatics; 2016 Aug 19; 17(1):311. PubMed ID: 27542753
    [Abstract] [Full Text] [Related]

  • 37. MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning.
    Afiahayati, Sato K, Sakakibara Y.
    DNA Res; 2015 Feb 19; 22(1):69-77. PubMed ID: 25431440
    [Abstract] [Full Text] [Related]

  • 38. A method for purifying high quality and high yield plasmid DNA for metagenomic and deep sequencing approaches.
    Brown Kav A, Benhar I, Mizrahi I.
    J Microbiol Methods; 2013 Nov 19; 95(2):272-9. PubMed ID: 24055388
    [Abstract] [Full Text] [Related]

  • 39. Assembling metagenomes, one community at a time.
    van der Walt AJ, van Goethem MW, Ramond JB, Makhalanyane TP, Reva O, Cowan DA.
    BMC Genomics; 2017 Jul 10; 18(1):521. PubMed ID: 28693474
    [Abstract] [Full Text] [Related]

  • 40. MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.
    Lugli GA, Milani C, Mancabelli L, van Sinderen D, Ventura M.
    FEMS Microbiol Lett; 2016 Apr 10; 363(7):. PubMed ID: 26936607
    [Abstract] [Full Text] [Related]

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