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Journal Abstract Search

188 related items for PubMed ID: 31137193

  • 1. SNFM: A semi-supervised NMF algorithm for detecting biological functional modules.
    Man YT, Liu GM, Yang K, Zhou XZ.
    Math Biosci Eng; 2019 Mar 07; 16(4):1933-1948. PubMed ID: 31137193
    [Abstract] [Full Text] [Related]

  • 2. Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.
    Li M, Wu X, Wang J, Pan Y.
    BMC Bioinformatics; 2012 May 23; 13():109. PubMed ID: 22621308
    [Abstract] [Full Text] [Related]

  • 3. Decision tree classifier based on topological characteristics of subgraph for the mining of protein complexes from large scale PPI networks.
    Sahoo TR, Patra S, Vipsita S.
    Comput Biol Chem; 2023 Oct 23; 106():107935. PubMed ID: 37536230
    [Abstract] [Full Text] [Related]

  • 4. Overlapping functional modules detection in PPI network with pair-wise constrained non-negative matrix tri-factorisation.
    Liu G, Chai B, Yang K, Yu J, Zhou X.
    IET Syst Biol; 2018 Apr 23; 12(2):45-54. PubMed ID: 29533217
    [Abstract] [Full Text] [Related]

  • 5. Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks.
    Ji J, Lv J, Yang C, Zhang A.
    IEEE/ACM Trans Comput Biol Bioinform; 2016 Apr 23; 13(4):610-22. PubMed ID: 26394434
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  • 6. A Network Hierarchy-Based method for functional module detection in protein-protein interaction networks.
    Liu W, Ma L, Jeon B, Chen L, Chen B.
    J Theor Biol; 2018 Oct 14; 455():26-38. PubMed ID: 29981337
    [Abstract] [Full Text] [Related]

  • 7. Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.
    Cai B, Wang H, Zheng H, Wang H.
    Int J Comput Biol Drug Des; 2011 Oct 14; 4(3):290-306. PubMed ID: 21778561
    [Abstract] [Full Text] [Related]

  • 8. A novel subgradient-based optimization algorithm for blockmodel functional module identification.
    Wang Y, Qian X.
    BMC Bioinformatics; 2013 Oct 14; 14 Suppl 2(Suppl 2):S23. PubMed ID: 23368964
    [Abstract] [Full Text] [Related]

  • 9. Supervised maximum-likelihood weighting of composite protein networks for complex prediction.
    Yong CH, Liu G, Chua HN, Wong L.
    BMC Syst Biol; 2012 Oct 14; 6 Suppl 2(Suppl 2):S13. PubMed ID: 23281936
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  • 10. Feature related multi-view nonnegative matrix factorization for identifying conserved functional modules in multiple biological networks.
    Wang P, Gao L, Hu Y, Li F.
    BMC Bioinformatics; 2018 Oct 29; 19(1):394. PubMed ID: 30373534
    [Abstract] [Full Text] [Related]

  • 11. Identifying protein complexes based on multiple topological structures in PPI networks.
    Chen B, Wu FX.
    IEEE Trans Nanobioscience; 2013 Sep 29; 12(3):165-72. PubMed ID: 23974659
    [Abstract] [Full Text] [Related]

  • 12. Clustering PPI data by combining FA and SHC method.
    Lei X, Ying C, Wu FX, Xu J.
    BMC Genomics; 2015 Sep 29; 16 Suppl 3(Suppl 3):S3. PubMed ID: 25707632
    [Abstract] [Full Text] [Related]

  • 13. Protein Complexes Detection Based on Semi-Supervised Network Embedding Model.
    Zhu J, Zheng Z, Yang M, Fung GPC, Huang C.
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Sep 29; 18(2):797-803. PubMed ID: 31581089
    [Abstract] [Full Text] [Related]

  • 14. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
    Ou-Yang L, Yan H, Zhang XF.
    BMC Bioinformatics; 2017 Dec 01; 18(Suppl 13):463. PubMed ID: 29219066
    [Abstract] [Full Text] [Related]

  • 15. Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks.
    Chen B, Fan W, Liu J, Wu FX.
    Brief Bioinform; 2014 Mar 01; 15(2):177-94. PubMed ID: 23780996
    [Abstract] [Full Text] [Related]

  • 16. Functional diversity of topological modules in human protein-protein interaction networks.
    Liu G, Wang H, Chu H, Yu J, Zhou X.
    Sci Rep; 2017 Nov 23; 7(1):16199. PubMed ID: 29170401
    [Abstract] [Full Text] [Related]

  • 17. Identification of protein complexes and functional modules in E. coli PPI networks.
    Kong P, Huang G, Liu W.
    BMC Microbiol; 2020 Aug 06; 20(1):243. PubMed ID: 32762711
    [Abstract] [Full Text] [Related]

  • 18. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
    Yu L, Gao L, Li K, Zhao Y, Chiu DK.
    Comput Biol Chem; 2011 Oct 12; 35(5):298-307. PubMed ID: 22000801
    [Abstract] [Full Text] [Related]

  • 19. A NMF based approach for integrating multiple data sources to predict HIV-1-human PPIs.
    Ray S, Bandyopadhyay S.
    BMC Bioinformatics; 2016 Mar 08; 17():121. PubMed ID: 26956556
    [Abstract] [Full Text] [Related]

  • 20. Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network.
    Khunlertgit N, Yoon BJ.
    BMC Bioinformatics; 2016 Oct 06; 17(Suppl 13):351. PubMed ID: 27766944
    [Abstract] [Full Text] [Related]

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