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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

173 related items for PubMed ID: 31273380

  • 1. Closing the gap between formats for storing layout information in systems biology.
    Hoksza D, Gawron P, Ostaszewski M, Hasenauer J, Schneider R.
    Brief Bioinform; 2020 Jul 15; 21(4):1249-1260. PubMed ID: 31273380
    [Abstract] [Full Text] [Related]

  • 2.
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  • 3. Visualization of protein interaction networks: problems and solutions.
    Agapito G, Guzzi PH, Cannataro M.
    BMC Bioinformatics; 2013 Jul 15; 14 Suppl 1(Suppl 1):S1. PubMed ID: 23368786
    [Abstract] [Full Text] [Related]

  • 4. The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core.
    Gauges R, Rost U, Sahle S, Wengler K, Bergmann FT.
    J Integr Bioinform; 2015 Sep 04; 12(2):267. PubMed ID: 26528565
    [Abstract] [Full Text] [Related]

  • 5. MINERVA API and plugins: opening molecular network analysis and visualization to the community.
    Hoksza D, Gawron P, Ostaszewski M, Smula E, Schneider R.
    Bioinformatics; 2019 Nov 01; 35(21):4496-4498. PubMed ID: 31074494
    [Abstract] [Full Text] [Related]

  • 6. Supporting the SBML layout extension.
    Deckard A, Bergmann FT, Sauro HM.
    Bioinformatics; 2006 Dec 01; 22(23):2966-7. PubMed ID: 17038346
    [Abstract] [Full Text] [Related]

  • 7. Biographer: web-based editing and rendering of SBGN compliant biochemical networks.
    Krause F, Schulz M, Ripkens B, Flöttmann M, Krantz M, Klipp E, Handorf T.
    Bioinformatics; 2013 Jun 01; 29(11):1467-8. PubMed ID: 23574737
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  • 9. BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
    Bonnet E, Calzone L, Rovera D, Stoll G, Barillot E, Zinovyev A.
    BMC Syst Biol; 2013 Mar 01; 7():18. PubMed ID: 23453054
    [Abstract] [Full Text] [Related]

  • 10. Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
    Czauderna T, Wybrow M, Marriott K, Schreiber F.
    BMC Bioinformatics; 2013 Aug 16; 14():250. PubMed ID: 23953132
    [Abstract] [Full Text] [Related]

  • 11. Exploration and comparison of molecular mechanisms across diseases using MINERVA Net.
    Gawron P, Smula E, Schneider R, Ostaszewski M.
    Protein Sci; 2023 Feb 16; 32(2):e4565. PubMed ID: 36648161
    [Abstract] [Full Text] [Related]

  • 12. SBML Level 3 package: Render, Version 1, Release 1.
    Bergmann FT, Keating SM, Gauges R, Sahle S, Wengler K.
    J Integr Bioinform; 2018 Apr 02; 15(1):. PubMed ID: 29605822
    [Abstract] [Full Text] [Related]

  • 13. Systems biology graphical notation markup language (SBGNML) version 0.3.
    Bergmann FT, Czauderna T, Dogrusoz U, Rougny A, Dräger A, Touré V, Mazein A, Blinov ML, Luna A.
    J Integr Bioinform; 2020 Jun 22; 17(2-3):. PubMed ID: 32568733
    [Abstract] [Full Text] [Related]

  • 14. A new grid- and modularity-based layout algorithm for complex biological networks.
    He S, Liu YJ, Ye FY, Li RP, Dai RJ.
    PLoS One; 2019 Jun 22; 14(8):e0221620. PubMed ID: 31465473
    [Abstract] [Full Text] [Related]

  • 15. Information Visualization for Biological Data.
    Czauderna T, Schreiber F.
    Methods Mol Biol; 2017 Jun 22; 1526():403-415. PubMed ID: 27896753
    [Abstract] [Full Text] [Related]

  • 16. Integrating BioPAX pathway knowledge with SBML models.
    Ruebenacker O, Moraru II, Schaff JC, Blinov ML.
    IET Syst Biol; 2009 Sep 22; 3(5):317-28. PubMed ID: 21028923
    [Abstract] [Full Text] [Related]

  • 17. FragViz: visualization of fragmented networks.
    Stajdohar M, Mramor M, Zupan B, Demšar J.
    BMC Bioinformatics; 2010 Sep 22; 11():475. PubMed ID: 20860802
    [Abstract] [Full Text] [Related]

  • 18. SBMLDiagrams: a python package to process and visualize SBML layout and render.
    Xu J, Jiang J, Sauro HM.
    Bioinformatics; 2023 Jan 01; 39(1):. PubMed ID: 36370074
    [Abstract] [Full Text] [Related]

  • 19. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.
    Balaur I, Roy L, Mazein A, Karaca SG, Dogrusoz U, Barillot E, Zinovyev A.
    Bioinformatics; 2020 Apr 15; 36(8):2620-2622. PubMed ID: 31904823
    [Abstract] [Full Text] [Related]

  • 20. ProCon - PROteomics CONversion tool.
    Mayer G, Stephan C, Meyer HE, Kohl M, Marcus K, Eisenacher M.
    J Proteomics; 2015 Nov 03; 129():56-62. PubMed ID: 26182917
    [Abstract] [Full Text] [Related]

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