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Pubmed for Handhelds

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Journal Abstract Search

386 related items for PubMed ID: 31287816

  • 1. Managing genomic variant calling workflows with Swift/T.
    Ahmed AE, Heldenbrand J, Asmann Y, Fadlelmola FM, Katz DS, Kendig K, Kendzior MC, Li T, Ren Y, Rodriguez E, Weber MR, Wozniak JM, Zermeno J, Mainzer LS.
    PLoS One; 2019; 14(7):e0211608. PubMed ID: 31287816
    [Abstract] [Full Text] [Related]

  • 2. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications.
    Herrick N, Walsh S.
    BMC Bioinformatics; 2023 Nov 08; 24(1):424. PubMed ID: 37940870
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  • 3. Design considerations for workflow management systems use in production genomics research and the clinic.
    Ahmed AE, Allen JM, Bhat T, Burra P, Fliege CE, Hart SN, Heldenbrand JR, Hudson ME, Istanto DD, Kalmbach MT, Kapraun GD, Kendig KI, Kendzior MC, Klee EW, Mattson N, Ross CA, Sharif SM, Venkatakrishnan R, Fadlelmola FM, Mainzer LS.
    Sci Rep; 2021 Nov 04; 11(1):21680. PubMed ID: 34737383
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  • 6. PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
    Liu Y, Khan SM, Wang J, Rynge M, Zhang Y, Zeng S, Chen S, Maldonado Dos Santos JV, Valliyodan B, Calyam PP, Merchant N, Nguyen HT, Xu D, Joshi T.
    BMC Bioinformatics; 2016 Oct 06; 17(Suppl 13):337. PubMed ID: 27766951
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  • 8. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework.
    Ahmad T, Ahmed N, Al-Ars Z, Hofstee HP.
    BMC Genomics; 2020 Nov 18; 21(Suppl 10):683. PubMed ID: 33208101
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  • 9. Agile parallel bioinformatics workflow management using Pwrake.
    Mishima H, Sasaki K, Tanaka M, Tatebe O, Yoshiura K.
    BMC Res Notes; 2011 Sep 08; 4():331. PubMed ID: 21899774
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  • 10. Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.
    Ohta T, Tanjo T, Ogasawara O.
    Gigascience; 2019 Apr 01; 8(4):. PubMed ID: 31222199
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  • 11. scalepopgen: Bioinformatic Workflow Resources Implemented in Nextflow for Comprehensive Population Genomic Analyses.
    Upadhyay M, Pogorevc N, Medugorac I.
    Mol Biol Evol; 2024 Apr 02; 41(4):. PubMed ID: 38507648
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  • 15. Evaluation of serverless computing for scalable execution of a joint variant calling workflow.
    John A, Muenzen K, Ausmees K.
    PLoS One; 2021 Apr 02; 16(7):e0254363. PubMed ID: 34242357
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  • 16. JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.
    Brown DK, Penkler DL, Musyoka TM, Bishop ÖT.
    PLoS One; 2015 Apr 02; 10(8):e0134273. PubMed ID: 26280450
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  • 17. Container-based bioinformatics with Pachyderm.
    Novella JA, Emami Khoonsari P, Herman S, Whitenack D, Capuccini M, Burman J, Kultima K, Spjuth O.
    Bioinformatics; 2019 Mar 01; 35(5):839-846. PubMed ID: 30101309
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  • 18. Managing Complex Workflows in Bioinformatics: An Interactive Toolkit With GPU Acceleration.
    Welivita A, Perera I, Meedeniya D, Wickramarachchi A, Mallawaarachchi V.
    IEEE Trans Nanobioscience; 2018 Jul 01; 17(3):199-208. PubMed ID: 29994533
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