These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

194 related items for PubMed ID: 31441995

  • 1. PepVis: An integrated peptide virtual screening pipeline for ensemble and flexible docking protocols.
    Ansar S, Vetrivel U.
    Chem Biol Drug Des; 2019 Dec; 94(6):2041-2050. PubMed ID: 31441995
    [Abstract] [Full Text] [Related]

  • 2. Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides.
    Zhou P, Li B, Yan Y, Jin B, Wang L, Huang SY.
    J Chem Inf Model; 2018 Jun 25; 58(6):1292-1302. PubMed ID: 29738247
    [Abstract] [Full Text] [Related]

  • 3. POAP: A GNU parallel based multithreaded pipeline of open babel and AutoDock suite for boosted high throughput virtual screening.
    Samdani A, Vetrivel U.
    Comput Biol Chem; 2018 Jun 25; 74():39-48. PubMed ID: 29533817
    [Abstract] [Full Text] [Related]

  • 4. AutoDock CrankPep: combining folding and docking to predict protein-peptide complexes.
    Zhang Y, Sanner MF.
    Bioinformatics; 2019 Dec 15; 35(24):5121-5127. PubMed ID: 31161213
    [Abstract] [Full Text] [Related]

  • 5. BioProtIS: Streamlining protein-ligand interaction pipeline for analysis in genomic and transcriptomic exploration.
    Virgens GS, Oliveira J, Cardoso MIO, Teodoro JA, Amaral DT.
    J Mol Graph Model; 2024 May 15; 128():108721. PubMed ID: 38308972
    [Abstract] [Full Text] [Related]

  • 6. Highly Flexible Ligand Docking: Benchmarking of the DockThor Program on the LEADS-PEP Protein-Peptide Data Set.
    Santos KB, Guedes IA, Karl ALM, Dardenne LE.
    J Chem Inf Model; 2020 Feb 24; 60(2):667-683. PubMed ID: 31922754
    [Abstract] [Full Text] [Related]

  • 7. InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.
    Mohammad T, Mathur Y, Hassan MI.
    Brief Bioinform; 2021 Jul 20; 22(4):. PubMed ID: 33105480
    [Abstract] [Full Text] [Related]

  • 8. Comprehensive Evaluation of Fourteen Docking Programs on Protein-Peptide Complexes.
    Weng G, Gao J, Wang Z, Wang E, Hu X, Yao X, Cao D, Hou T.
    J Chem Theory Comput; 2020 Jun 09; 16(6):3959-3969. PubMed ID: 32324992
    [Abstract] [Full Text] [Related]

  • 9. Benchmarking of different molecular docking methods for protein-peptide docking.
    Agrawal P, Singh H, Srivastava HK, Singh S, Kishore G, Raghava GPS.
    BMC Bioinformatics; 2019 Feb 04; 19(Suppl 13):426. PubMed ID: 30717654
    [Abstract] [Full Text] [Related]

  • 10. Toward fully automated high performance computing drug discovery: a massively parallel virtual screening pipeline for docking and molecular mechanics/generalized Born surface area rescoring to improve enrichment.
    Zhang X, Wong SE, Lightstone FC.
    J Chem Inf Model; 2014 Jan 27; 54(1):324-37. PubMed ID: 24358939
    [Abstract] [Full Text] [Related]

  • 11. MOLS 2.0: software package for peptide modeling and protein-ligand docking.
    Paul DS, Gautham N.
    J Mol Model; 2016 Oct 27; 22(10):239. PubMed ID: 27638416
    [Abstract] [Full Text] [Related]

  • 12. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V, Günther R.
    Chem Biol Drug Des; 2007 Dec 27; 70(6):475-84. PubMed ID: 17986206
    [Abstract] [Full Text] [Related]

  • 13. Vina-GPU 2.0: Further Accelerating AutoDock Vina and Its Derivatives with Graphics Processing Units.
    Ding J, Tang S, Mei Z, Wang L, Huang Q, Hu H, Ling M, Wu J.
    J Chem Inf Model; 2023 Apr 10; 63(7):1982-1998. PubMed ID: 36941232
    [Abstract] [Full Text] [Related]

  • 14. Protein-small molecule docking with receptor flexibility in iMOLSDOCK.
    Sam Paul D, Gautham N.
    J Comput Aided Mol Des; 2018 Sep 10; 32(9):889-900. PubMed ID: 30128925
    [Abstract] [Full Text] [Related]

  • 15. A unified conformational selection and induced fit approach to protein-peptide docking.
    Trellet M, Melquiond AS, Bonvin AM.
    PLoS One; 2013 Sep 10; 8(3):e58769. PubMed ID: 23516555
    [Abstract] [Full Text] [Related]

  • 16. PeptoGrid-Rescoring Function for AutoDock Vina to Identify New Bioactive Molecules from Short Peptide Libraries.
    Zalevsky AO, Zlobin AS, Gedzun VR, Reshetnikov RV, Lovat ML, Malyshev AV, Doronin II, Babkin GA, Golovin AV.
    Molecules; 2019 Jan 13; 24(2):. PubMed ID: 30642123
    [Abstract] [Full Text] [Related]

  • 17. Chaos-embedded particle swarm optimization approach for protein-ligand docking and virtual screening.
    Tai HK, Jusoh SA, Siu SWI.
    J Cheminform; 2018 Dec 14; 10(1):62. PubMed ID: 30552524
    [Abstract] [Full Text] [Related]

  • 18. Structure-based design of small molecule and peptide inhibitors for selective targeting of ROCK1: an integrative computational approach.
    Ansar S, Vetrivel U.
    J Biomol Struct Dyn; 2022 Oct 14; 40(16):7450-7468. PubMed ID: 33715594
    [Abstract] [Full Text] [Related]

  • 19. Getting Docking into Shape Using Negative Image-Based Rescoring.
    Kurkinen ST, Lätti S, Pentikäinen OT, Postila PA.
    J Chem Inf Model; 2019 Aug 26; 59(8):3584-3599. PubMed ID: 31290660
    [Abstract] [Full Text] [Related]

  • 20. Efficient conformational ensemble generation of protein-bound peptides.
    Yan Y, Zhang D, Huang SY.
    J Cheminform; 2017 Nov 22; 9(1):59. PubMed ID: 29168051
    [Abstract] [Full Text] [Related]

    Page: [Next] [New Search]
    of 10.