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Journal Abstract Search

174 related items for PubMed ID: 31566225

  • 1. OGRDB: a reference database of inferred immune receptor genes.
    Lees W, Busse CE, Corcoran M, Ohlin M, Scheepers C, Matsen FA, Yaari G, Watson CT, AIRR Community, Collins A, Shepherd AJ.
    Nucleic Acids Res; 2020 Jan 08; 48(D1):D964-D970. PubMed ID: 31566225
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  • 2. Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.
    Ohlin M, Scheepers C, Corcoran M, Lees WD, Busse CE, Bagnara D, Thörnqvist L, Bürckert JP, Jackson KJL, Ralph D, Schramm CA, Marthandan N, Breden F, Scott J, Matsen Iv FA, Greiff V, Yaari G, Kleinstein SH, Christley S, Sherkow JS, Kossida S, Lefranc MP, van Zelm MC, Watson CT, Collins AM.
    Front Immunol; 2019 Jan 08; 10():435. PubMed ID: 30936866
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  • 9. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation.
    Babrak L, Marquez S, Busse CE, Lees WD, Miho E, Ohlin M, Rosenfeld AM, Stervbo U, Watson CT, Schramm CA, AIRR Community.
    Methods Mol Biol; 2022 Jan 08; 2453():279-296. PubMed ID: 35622332
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  • 13. Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data.
    Peres A, Klein V, Frankel B, Lees W, Polak P, Meehan M, Rocha A, Correia Lopes J, Yaari G.
    Brief Bioinform; 2024 Mar 27; 25(3):. PubMed ID: 38752856
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  • 15. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
    Mendoza-Parra MA, Saleem MA, Blum M, Cholley PE, Gronemeyer H.
    Methods Mol Biol; 2016 Mar 27; 1418():243-65. PubMed ID: 27008019
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  • 17. The ExAC browser: displaying reference data information from over 60 000 exomes.
    Karczewski KJ, Weisburd B, Thomas B, Solomonson M, Ruderfer DM, Kavanagh D, Hamamsy T, Lek M, Samocha KE, Cummings BB, Birnbaum D, The Exome Aggregation Consortium, Daly MJ, MacArthur DG.
    Nucleic Acids Res; 2017 Jan 04; 45(D1):D840-D845. PubMed ID: 27899611
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  • 18. AIRR Community Guide to Planning and Performing AIRR-Seq Experiments.
    Eugster A, Bostick ML, Gupta N, Mariotti-Ferrandiz E, Kraus G, Meng W, Soto C, Trück J, Stervbo U, Luning Prak ET, AIRR Community.
    Methods Mol Biol; 2022 Jan 04; 2453():261-278. PubMed ID: 35622331
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  • 19. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
    Christley S, Scarborough W, Salinas E, Rounds WH, Toby IT, Fonner JM, Levin MK, Kim M, Mock SA, Jordan C, Ostmeyer J, Buntzman A, Rubelt F, Davila ML, Monson NL, Scheuermann RH, Cowell LG.
    Front Immunol; 2018 Jan 04; 9():976. PubMed ID: 29867956
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  • 20. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.
    Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG.
    BMC Bioinformatics; 2016 Oct 06; 17(Suppl 13):333. PubMed ID: 27766961
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