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Journal Abstract Search

239 related items for PubMed ID: 31583626

  • 1. Predicting Protein-Protein Interactions Using SPRINT.
    Li Y, Ilie L.
    Methods Mol Biol; 2020; 2074():1-11. PubMed ID: 31583626
    [Abstract] [Full Text] [Related]

  • 2. SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome.
    Li Y, Ilie L.
    BMC Bioinformatics; 2017 Nov 15; 18(1):485. PubMed ID: 29141584
    [Abstract] [Full Text] [Related]

  • 3. Fundamentals of protein interaction network mapping.
    Snider J, Kotlyar M, Saraon P, Yao Z, Jurisica I, Stagljar I.
    Mol Syst Biol; 2015 Dec 17; 11(12):848. PubMed ID: 26681426
    [Abstract] [Full Text] [Related]

  • 4. Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators.
    Murakami Y, Mizuguchi K.
    BMC Bioinformatics; 2014 Jun 23; 15():213. PubMed ID: 24953126
    [Abstract] [Full Text] [Related]

  • 5. Improving the Detection of Protein Complexes by Predicting Novel Missing Interactome Links in the Protein-Protein Interaction Network.
    Zaki N, Alashwal H.
    Annu Int Conf IEEE Eng Med Biol Soc; 2018 Jul 23; 2018():5041-5044. PubMed ID: 30441473
    [Abstract] [Full Text] [Related]

  • 6. Hierarchical graph learning for protein-protein interaction.
    Gao Z, Jiang C, Zhang J, Jiang X, Li L, Zhao P, Yang H, Huang Y, Li J.
    Nat Commun; 2023 Feb 25; 14(1):1093. PubMed ID: 36841846
    [Abstract] [Full Text] [Related]

  • 7. A computational model for predicting protein interactions based on multidomain collaboration.
    Jang WH, Jung SH, Han DS.
    IEEE/ACM Trans Comput Biol Bioinform; 2012 Feb 25; 9(4):1081-90. PubMed ID: 22508910
    [Abstract] [Full Text] [Related]

  • 8. Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information.
    Tuncbag N, Keskin O, Nussinov R, Gursoy A.
    Methods Mol Biol; 2017 Feb 25; 1558():255-270. PubMed ID: 28150242
    [Abstract] [Full Text] [Related]

  • 9. Estimating dispensable content in the human interactome.
    Ghadie M, Xia Y.
    Nat Commun; 2019 Jul 19; 10(1):3205. PubMed ID: 31324802
    [Abstract] [Full Text] [Related]

  • 10. Exploring the Knowledge of an Outstanding Protein to Protein Interaction Transformer.
    Yang S, Cheng P, Liu Y, Feng D, Wang S.
    IEEE/ACM Trans Comput Biol Bioinform; 2024 Jul 19; 21(5):1287-1298. PubMed ID: 38536676
    [Abstract] [Full Text] [Related]

  • 11. In silico prediction of physical protein interactions and characterization of interactome orphans.
    Kotlyar M, Pastrello C, Pivetta F, Lo Sardo A, Cumbaa C, Li H, Naranian T, Niu Y, Ding Z, Vafaee F, Broackes-Carter F, Petschnigg J, Mills GB, Jurisicova A, Stagljar I, Maestro R, Jurisica I.
    Nat Methods; 2015 Jan 19; 12(1):79-84. PubMed ID: 25402006
    [Abstract] [Full Text] [Related]

  • 12. Predicting Protein Interaction Sites Using PITHIA.
    Hosseini S, Ilie L.
    Methods Mol Biol; 2023 Jan 19; 2690():375-383. PubMed ID: 37450160
    [Abstract] [Full Text] [Related]

  • 13. Application of Machine Learning Approaches for Protein-protein Interactions Prediction.
    Zhang M, Su Q, Lu Y, Zhao M, Niu B.
    Med Chem; 2017 Jan 19; 13(6):506-514. PubMed ID: 28530547
    [Abstract] [Full Text] [Related]

  • 14. The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction Prediction.
    Fang Y, Sun M, Dai G, Ramain K.
    IEEE/ACM Trans Comput Biol Bioinform; 2016 Jan 19; 13(1):76-85. PubMed ID: 26886733
    [Abstract] [Full Text] [Related]

  • 15. Assessment of community efforts to advance network-based prediction of protein-protein interactions.
    Wang XW, Madeddu L, Spirohn K, Martini L, Fazzone A, Becchetti L, Wytock TP, Kovács IA, Balogh OM, Benczik B, Pétervári M, Ágg B, Ferdinandy P, Vulliard L, Menche J, Colonnese S, Petti M, Scarano G, Cuomo F, Hao T, Laval F, Willems L, Twizere JC, Vidal M, Calderwood MA, Petrillo E, Barabási AL, Silverman EK, Loscalzo J, Velardi P, Liu YY.
    Nat Commun; 2023 Mar 22; 14(1):1582. PubMed ID: 36949045
    [Abstract] [Full Text] [Related]

  • 16. A method for predicting protein complex in dynamic PPI networks.
    Zhang Y, Lin H, Yang Z, Wang J, Liu Y, Sang S.
    BMC Bioinformatics; 2016 Jul 25; 17 Suppl 7(Suppl 7):229. PubMed ID: 27454775
    [Abstract] [Full Text] [Related]

  • 17. IIIDB: a database for isoform-isoform interactions and isoform network modules.
    Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.
    BMC Genomics; 2015 Jul 25; 16 Suppl 2(Suppl 2):S10. PubMed ID: 25707505
    [Abstract] [Full Text] [Related]

  • 18. IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks.
    Yerneni S, Khan IK, Wei Q, Kihara D.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Jul 25; 15(4):1247-1258. PubMed ID: 26415209
    [Abstract] [Full Text] [Related]

  • 19. Amalgamation of 3D structure and sequence information for protein-protein interaction prediction.
    Jha K, Saha S.
    Sci Rep; 2020 Nov 05; 10(1):19171. PubMed ID: 33154416
    [Abstract] [Full Text] [Related]

  • 20. Understanding protein-protein interactions using local structural features.
    Planas-Iglesias J, Bonet J, García-García J, Marín-López MA, Feliu E, Oliva B.
    J Mol Biol; 2013 Apr 12; 425(7):1210-24. PubMed ID: 23353828
    [Abstract] [Full Text] [Related]

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