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Journal Abstract Search

196 related items for PubMed ID: 31589052

  • 1. MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics.
    Bichmann L, Nelde A, Ghosh M, Heumos L, Mohr C, Peltzer A, Kuchenbecker L, Sachsenberg T, Walz JS, Stevanović S, Rammensee HG, Kohlbacher O.
    J Proteome Res; 2019 Nov 01; 18(11):3876-3884. PubMed ID: 31589052
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  • 2. APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.
    Malm EK, Srivastava V, Sundqvist G, Bulone V.
    BMC Bioinformatics; 2014 Dec 30; 15(1):441. PubMed ID: 25547515
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  • 4. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
    Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.
    BMC Bioinformatics; 2008 Dec 16; 9():542. PubMed ID: 19087345
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  • 5. Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics.
    Wilhelm M, Zolg DP, Graber M, Gessulat S, Schmidt T, Schnatbaum K, Schwencke-Westphal C, Seifert P, de Andrade Krätzig N, Zerweck J, Knaute T, Bräunlein E, Samaras P, Lautenbacher L, Klaeger S, Wenschuh H, Rad R, Delanghe B, Huhmer A, Carr SA, Clauser KR, Krackhardt AM, Reimer U, Kuster B.
    Nat Commun; 2021 Jun 07; 12(1):3346. PubMed ID: 34099720
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  • 6. An automated pipeline for high-throughput label-free quantitative proteomics.
    Weisser H, Nahnsen S, Grossmann J, Nilse L, Quandt A, Brauer H, Sturm M, Kenar E, Kohlbacher O, Aebersold R, Malmström L.
    J Proteome Res; 2013 Apr 05; 12(4):1628-44. PubMed ID: 23391308
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  • 7. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E, Uszkoreit J, Sachsenberg T, Pfeuffer J, Liang X, Hermjakob H, Sanchez A, Eisenacher M, Reinert K, Tabb DL, Kohlbacher O, Perez-Riverol Y.
    J Proteomics; 2017 Jan 06; 150():170-182. PubMed ID: 27498275
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  • 8. Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction.
    Pak H, Michaux J, Huber F, Chong C, Stevenson BJ, Müller M, Coukos G, Bassani-Sternberg M.
    Mol Cell Proteomics; 2021 Jan 06; 20():100080. PubMed ID: 33845167
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  • 11. Guidance Document: Validation of a High-Performance Liquid Chromatography-Tandem Mass Spectrometry Immunopeptidomics Assay for the Identification of HLA Class I Ligands Suitable for Pharmaceutical Therapies.
    Ghosh M, Gauger M, Marcu A, Nelde A, Denk M, Schuster H, Rammensee HG, Stevanović S.
    Mol Cell Proteomics; 2020 Mar 06; 19(3):432-443. PubMed ID: 31937595
    [Abstract] [Full Text] [Related]

  • 12. Crucial Parameters for Immunopeptidome Characterization: A Systematic Evaluation.
    Juanes-Velasco P, Arias-Hidalgo C, García-Vaquero ML, Sotolongo-Ravelo J, Paíno T, Lécrevisse Q, Landeira-Viñuela A, Góngora R, Hernández ÁP, Fuentes M.
    Int J Mol Sci; 2024 Sep 03; 25(17):. PubMed ID: 39273511
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  • 13. Protein Inference Using PIA Workflows and PSI Standard File Formats.
    Uszkoreit J, Perez-Riverol Y, Eggers B, Marcus K, Eisenacher M.
    J Proteome Res; 2019 Feb 01; 18(2):741-747. PubMed ID: 30474983
    [Abstract] [Full Text] [Related]

  • 14. Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
    Gehlenborg N, Yan W, Lee IY, Yoo H, Nieselt K, Hwang D, Aebersold R, Hood L.
    Bioinformatics; 2009 Mar 01; 25(5):682-3. PubMed ID: 19129212
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  • 18. Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry.
    Freudenmann LK, Marcu A, Stevanović S.
    Immunology; 2018 Jul 01; 154(3):331-345. PubMed ID: 29658117
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  • 19. DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics.
    Bichmann L, Gupta S, Rosenberger G, Kuchenbecker L, Sachsenberg T, Ewels P, Alka O, Pfeuffer J, Kohlbacher O, Röst H.
    J Proteome Res; 2021 Jul 02; 20(7):3758-3766. PubMed ID: 34153189
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