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Journal Abstract Search

190 related items for PubMed ID: 31673037

  • 1. Improved 18S and 28S rDNA primer sets for NGS-based parasite detection.
    Kounosu A, Murase K, Yoshida A, Maruyama H, Kikuchi T.
    Sci Rep; 2019 Oct 31; 9(1):15789. PubMed ID: 31673037
    [Abstract] [Full Text] [Related]

  • 2. Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing.
    Latz MAC, Grujcic V, Brugel S, Lycken J, John U, Karlson B, Andersson A, Andersson AF.
    Mol Ecol Resour; 2022 Aug 31; 22(6):2304-2318. PubMed ID: 35437888
    [Abstract] [Full Text] [Related]

  • 3. Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing.
    Flaherty BR, Barratt J, Lane M, Talundzic E, Bradbury RS.
    Microbiome; 2021 Jan 02; 9(1):1. PubMed ID: 33388088
    [Abstract] [Full Text] [Related]

  • 4. Coamplification of eukaryotic DNA with 16S rRNA gene-based PCR primers: possible consequences for population fingerprinting of complex microbial communities.
    Huys G, Vanhoutte T, Joossens M, Mahious AS, De Brandt E, Vermeire S, Swings J.
    Curr Microbiol; 2008 Jun 02; 56(6):553-7. PubMed ID: 18301945
    [Abstract] [Full Text] [Related]

  • 5. Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform.
    Choi J, Park JS.
    Sci Rep; 2020 Apr 16; 10(1):6519. PubMed ID: 32300168
    [Abstract] [Full Text] [Related]

  • 6. Identification of eukaryotic microorganisms with 18S rRNA next-generation sequencing in wastewater treatment plants, with a more targeted NGS approach required for Cryptosporidium detection.
    Zahedi A, Greay TL, Paparini A, Linge KL, Joll CA, Ryan UM.
    Water Res; 2019 Jul 01; 158():301-312. PubMed ID: 31051375
    [Abstract] [Full Text] [Related]

  • 7. A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms.
    Banos S, Lentendu G, Kopf A, Wubet T, Glöckner FO, Reich M.
    BMC Microbiol; 2018 Nov 20; 18(1):190. PubMed ID: 30458701
    [Abstract] [Full Text] [Related]

  • 8. Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia.
    Hugerth LW, Muller EE, Hu YO, Lebrun LA, Roume H, Lundin D, Wilmes P, Andersson AF.
    PLoS One; 2014 Nov 20; 9(4):e95567. PubMed ID: 24755918
    [Abstract] [Full Text] [Related]

  • 9. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.
    Parada AE, Needham DM, Fuhrman JA.
    Environ Microbiol; 2016 May 20; 18(5):1403-14. PubMed ID: 26271760
    [Abstract] [Full Text] [Related]

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  • 11. Characterization of the 18S rRNA gene for designing universal eukaryote specific primers.
    Hadziavdic K, Lekang K, Lanzen A, Jonassen I, Thompson EM, Troedsson C.
    PLoS One; 2014 May 20; 9(2):e87624. PubMed ID: 24516555
    [Abstract] [Full Text] [Related]

  • 12. Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.
    Flaherty BR, Talundzic E, Barratt J, Kines KJ, Olsen C, Lane M, Sheth M, Bradbury RS.
    Microbiome; 2018 Sep 17; 6(1):164. PubMed ID: 30223888
    [Abstract] [Full Text] [Related]

  • 13. Measurements of soil protist richness and community composition are influenced by primer pair, annealing temperature, and bioinformatics choices.
    Mau RL, Hayer M, Purcell AM, Geisen S, Hungate BA, Schwartz E.
    Appl Environ Microbiol; 2024 Jul 24; 90(7):e0080024. PubMed ID: 38920364
    [Abstract] [Full Text] [Related]

  • 14. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.
    Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO.
    Nucleic Acids Res; 2013 Jan 07; 41(1):e1. PubMed ID: 22933715
    [Abstract] [Full Text] [Related]

  • 15. Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic Communities.
    Bradley IM, Pinto AJ, Guest JS.
    Appl Environ Microbiol; 2016 Oct 01; 82(19):5878-91. PubMed ID: 27451454
    [Abstract] [Full Text] [Related]

  • 16. Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S.
    Yeh YC, McNichol J, Needham DM, Fichot EB, Berdjeb L, Fuhrman JA.
    Environ Microbiol; 2021 Jun 01; 23(6):3240-3250. PubMed ID: 33938123
    [Abstract] [Full Text] [Related]

  • 17. Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.
    Karst SM, Dueholm MS, McIlroy SJ, Kirkegaard RH, Nielsen PH, Albertsen M.
    Nat Biotechnol; 2018 Feb 01; 36(2):190-195. PubMed ID: 29291348
    [Abstract] [Full Text] [Related]

  • 18. PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences.
    Machida RJ, Knowlton N.
    PLoS One; 2012 Feb 01; 7(9):e46180. PubMed ID: 23049971
    [Abstract] [Full Text] [Related]

  • 19. Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.
    Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M, Kurokawa K.
    DNA Res; 2014 Feb 01; 21(2):217-27. PubMed ID: 24277737
    [Abstract] [Full Text] [Related]

  • 20. Obtaining long 16S rDNA sequences using multiple primers and its application on dioxin-containing samples.
    Chen YL, Lee CC, Lin YL, Yin KM, Ho CL, Liu T.
    BMC Bioinformatics; 2015 Feb 01; 16 Suppl 18(Suppl 18):S13. PubMed ID: 26681335
    [Abstract] [Full Text] [Related]

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