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1401 related items for PubMed ID: 31787070

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  • 2. Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient.
    Kang J, Siranosian B, Moss E, Andermann T, Bhatt A.
    Proceedings (IEEE Int Conf Bioinformatics Biomed); 2018 Dec; 2018():234-241. PubMed ID: 33833903
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  • 5. Gut microbiome perturbation, antibiotic resistance, and Escherichia coli strain dynamics associated with international travel: a metagenomic analysis.
    Worby CJ, Sridhar S, Turbett SE, Becker MV, Kogut L, Sanchez V, Bronson RA, Rao SR, Oliver E, Walker AT, Walters MS, Kelly P, Leung DT, Knouse MC, Hagmann SHF, Harris JB, Ryan ET, Earl AM, LaRocque RC.
    Lancet Microbe; 2023 Oct; 4(10):e790-e799. PubMed ID: 37716364
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  • 6. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
    Yorki S, Shea T, Cuomo CA, Walker BJ, LaRocque RC, Manson AL, Earl AM, Worby CJ.
    Brief Bioinform; 2023 Mar 19; 24(2):. PubMed ID: 36804804
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  • 7. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB.
    Gigascience; 2017 Mar 01; 6(3):1-10. PubMed ID: 28327976
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  • 10. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M, Lee J, Wy S, Park N, Lee D, Kwon D, Kim J.
    Gigascience; 2022 May 17; 11():. PubMed ID: 35579554
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  • 13. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD.
    Microbiome; 2018 Mar 20; 6(1):50. PubMed ID: 29554948
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  • 17. Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes.
    Kim CY, Lee M, Yang S, Kim K, Yong D, Kim HR, Lee I.
    Genome Med; 2021 Aug 27; 13(1):134. PubMed ID: 34446072
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  • 18. Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.
    Gehrig JL, Portik DM, Driscoll MD, Jackson E, Chakraborty S, Gratalo D, Ashby M, Valladares R.
    Microb Genom; 2022 Mar 27; 8(3):. PubMed ID: 35302439
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  • 19. The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice.
    Xu L, Surathu A, Raplee I, Chockalingam A, Stewart S, Walker L, Sacks L, Patel V, Li Z, Rouse R.
    BMC Genomics; 2020 Mar 30; 21(1):263. PubMed ID: 32228448
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  • 20. Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults.
    Siranosian BA, Brooks EF, Andermann T, Rezvani AR, Banaei N, Tang H, Bhatt AS.
    Nat Commun; 2022 Jan 31; 13(1):586. PubMed ID: 35102136
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