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Journal Abstract Search

451 related items for PubMed ID: 31994759

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  • 23. Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45.
    Roy Burman SS, Nance ML, Jeliazkov JR, Labonte JW, Lubin JH, Biswas N, Gray JJ.
    Proteins; 2020 Aug; 88(8):973-985. PubMed ID: 31742764
    [Abstract] [Full Text] [Related]

  • 24. Structural quality of unrefined models in protein docking.
    Anishchenko I, Kundrotas PJ, Vakser IA.
    Proteins; 2017 Jan; 85(1):39-45. PubMed ID: 27756103
    [Abstract] [Full Text] [Related]

  • 25. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
    El Houasli M, Maigret B, Devignes MD, Ghoorah AW, Grudinin S, Ritchie DW.
    Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
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  • 26. Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction.
    Dapkūnas J, Olechnovič K, Venclovas Č.
    Proteins; 2021 Dec; 89(12):1834-1843. PubMed ID: 34176161
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  • 27. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
    Pallara C, Jiménez-García B, Romero M, Moal IH, Fernández-Recio J.
    Proteins; 2017 Mar; 85(3):487-496. PubMed ID: 27701776
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  • 28. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
    Quignot C, Rey J, Yu J, Tufféry P, Guerois R, Andreani J.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W408-W416. PubMed ID: 29741647
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  • 29. HawkDock: a web server to predict and analyze the protein-protein complex based on computational docking and MM/GBSA.
    Weng G, Wang E, Wang Z, Liu H, Zhu F, Li D, Hou T.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W322-W330. PubMed ID: 31106357
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  • 30. GPCR homology model template selection benchmarking: Global versus local similarity measures.
    Castleman PN, Sears CK, Cole JA, Baker DL, Parrill AL.
    J Mol Graph Model; 2019 Jan 02; 86():235-246. PubMed ID: 30390544
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  • 31. Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.
    Schindler CE, Chauvot de Beauchêne I, de Vries SJ, Zacharias M.
    Proteins; 2017 Mar 02; 85(3):391-398. PubMed ID: 27785830
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  • 32. Structural modeling of protein complexes: Current capabilities and challenges.
    Dapkūnas J, Olechnovič K, Venclovas Č.
    Proteins; 2019 Dec 02; 87(12):1222-1232. PubMed ID: 31294859
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  • 33. Modeling complexes of modeled proteins.
    Anishchenko I, Kundrotas PJ, Vakser IA.
    Proteins; 2017 Mar 02; 85(3):470-478. PubMed ID: 27701777
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  • 34. HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
    Zhou P, Jin B, Li H, Huang SY.
    Nucleic Acids Res; 2018 Jul 02; 46(W1):W443-W450. PubMed ID: 29746661
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  • 35. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
    Lee H, Baek M, Lee GR, Park S, Seok C.
    Proteins; 2017 Mar 02; 85(3):399-407. PubMed ID: 27770545
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  • 36. Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein-protein interactions.
    Roy AA, Dhawanjewar AS, Sharma P, Singh G, Madhusudhan MS.
    Nucleic Acids Res; 2019 Jul 02; 47(W1):W331-W337. PubMed ID: 31114890
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  • 37. Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.
    Torchala M, Gerguri T, Chaleil RAG, Gordon P, Russell F, Keshani M, Bates PA.
    Proteins; 2020 Aug 02; 88(8):962-972. PubMed ID: 31697436
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  • 38. Harnessing protein folding neural networks for peptide-protein docking.
    Tsaban T, Varga JK, Avraham O, Ben-Aharon Z, Khramushin A, Schueler-Furman O.
    Nat Commun; 2022 Jan 10; 13(1):176. PubMed ID: 35013344
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  • 39. Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
    Peterson LX, Kim H, Esquivel-Rodriguez J, Roy A, Han X, Shin WH, Zhang J, Terashi G, Lee M, Kihara D.
    Proteins; 2017 Mar 10; 85(3):513-527. PubMed ID: 27654025
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  • 40. Structural templates for comparative protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 Sep 10; 83(9):1563-70. PubMed ID: 25488330
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