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Journal Abstract Search

884 related items for PubMed ID: 32108314

  • 1. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
    Jo J, Oh J, Park C.
    J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
    [Abstract] [Full Text] [Related]

  • 2. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD.
    Microbiome; 2018 Mar 20; 6(1):50. PubMed ID: 29554948
    [Abstract] [Full Text] [Related]

  • 3. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C, Sadowsky MJ.
    J Microbiol Methods; 2018 Nov 20; 154():14-18. PubMed ID: 30287354
    [Abstract] [Full Text] [Related]

  • 4. An Introduction to Whole-Metagenome Shotgun Sequencing Studies.
    Joseph TA, Pe'er I.
    Methods Mol Biol; 2021 Nov 20; 2243():107-122. PubMed ID: 33606255
    [Abstract] [Full Text] [Related]

  • 5. Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses.
    Pérez-Cobas AE, Gomez-Valero L, Buchrieser C.
    Microb Genom; 2020 Aug 20; 6(8):. PubMed ID: 32706331
    [Abstract] [Full Text] [Related]

  • 6. Metagenomics methods for the study of plant-associated microbial communities: A review.
    Fadiji AE, Babalola OO.
    J Microbiol Methods; 2020 Mar 20; 170():105860. PubMed ID: 32027927
    [Abstract] [Full Text] [Related]

  • 7. metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data.
    Louvel G, Der Sarkissian C, Hanghøj K, Orlando L.
    Mol Ecol Resour; 2016 Nov 20; 16(6):1415-1427. PubMed ID: 27238636
    [Abstract] [Full Text] [Related]

  • 8. RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.
    Xie C, Goi CL, Huson DH, Little PF, Williams RB.
    BMC Bioinformatics; 2016 Dec 22; 17(Suppl 19):508. PubMed ID: 28155666
    [Abstract] [Full Text] [Related]

  • 9. Re-purposing software for functional characterization of the microbiome.
    Gardiner LJ, Haiminen N, Utro F, Parida L, Seabolt E, Krishna R, Kaufman JH.
    Microbiome; 2021 Jan 09; 9(1):4. PubMed ID: 33422152
    [Abstract] [Full Text] [Related]

  • 10. Bioinformatics for NGS-based metagenomics and the application to biogas research.
    Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, Stolze Y, Albaum SP, Schlüter A, Goesmann A, Sczyrba A, Stoye J.
    J Biotechnol; 2017 Nov 10; 261():10-23. PubMed ID: 28823476
    [Abstract] [Full Text] [Related]

  • 11. Metagenome analysis using the Kraken software suite.
    Lu J, Rincon N, Wood DE, Breitwieser FP, Pockrandt C, Langmead B, Salzberg SL, Steinegger M.
    Nat Protoc; 2022 Dec 10; 17(12):2815-2839. PubMed ID: 36171387
    [Abstract] [Full Text] [Related]

  • 12. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP, Glass EM, Meyer F.
    Methods Mol Biol; 2016 Dec 10; 1399():207-33. PubMed ID: 26791506
    [Abstract] [Full Text] [Related]

  • 13. CAIM: coverage-based analysis for identification of microbiome.
    Acheampong DA, Jenjaroenpun P, Wongsurawat T, Kurilung A, Pomyen Y, Kandel S, Kunadirek P, Chuaypen N, Kusonmano K, Nookaew I.
    Brief Bioinform; 2024 Jul 25; 25(5):. PubMed ID: 39222062
    [Abstract] [Full Text] [Related]

  • 14. Genome-resolved metagenomics using environmental and clinical samples.
    Kayani MUR, Huang W, Feng R, Chen L.
    Brief Bioinform; 2021 Sep 02; 22(5):. PubMed ID: 33758906
    [Abstract] [Full Text] [Related]

  • 15. Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome.
    Yap M, Feehily C, Walsh CJ, Fenelon M, Murphy EF, McAuliffe FM, van Sinderen D, O'Toole PW, O'Sullivan O, Cotter PD.
    Sci Rep; 2020 Dec 10; 10(1):21665. PubMed ID: 33303873
    [Abstract] [Full Text] [Related]

  • 16. MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
    Fosso B, Santamaria M, D'Antonio M, Lovero D, Corrado G, Vizza E, Passaro N, Garbuglia AR, Capobianchi MR, Crescenzi M, Valiente G, Pesole G.
    Bioinformatics; 2017 Jun 01; 33(11):1730-1732. PubMed ID: 28130230
    [Abstract] [Full Text] [Related]

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  • 18. What Is Metagenomics Teaching Us, and What Is Missed?
    New FN, Brito IL.
    Annu Rev Microbiol; 2020 Sep 08; 74():117-135. PubMed ID: 32603623
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