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Journal Abstract Search

139 related items for PubMed ID: 33180292

  • 1. Modular Modeling of Genetic Circuits in SBML Level 3.
    Marchisio MA.
    Methods Mol Biol; 2021; 2189():45-63. PubMed ID: 33180292
    [Abstract] [Full Text] [Related]

  • 2. Supporting SBML as a model exchange format in software applications.
    Keating SM, Le Novère N.
    Methods Mol Biol; 2013; 1021():201-25. PubMed ID: 23715987
    [Abstract] [Full Text] [Related]

  • 3. LibSBML: an API library for SBML.
    Bornstein BJ, Keating SM, Jouraku A, Hucka M.
    Bioinformatics; 2008 Mar 15; 24(6):880-1. PubMed ID: 18252737
    [Abstract] [Full Text] [Related]

  • 4. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
    Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ.
    J Integr Bioinform; 2018 Mar 09; 15(1):. PubMed ID: 29522418
    [Abstract] [Full Text] [Related]

  • 5. NOT Gates Based on Protein Degradation as a Case Study for a New Modular Modeling via SBML Level 3-Comp Package.
    Abraha BW, Marchisio MA.
    Front Bioeng Biotechnol; 2022 Mar 09; 10():845240. PubMed ID: 35360404
    [Abstract] [Full Text] [Related]

  • 6. JSBML: a flexible Java library for working with SBML.
    Dräger A, Rodriguez N, Dumousseau M, Dörr A, Wrzodek C, Le Novère N, Zell A, Hucka M.
    Bioinformatics; 2011 Aug 01; 27(15):2167-8. PubMed ID: 21697129
    [Abstract] [Full Text] [Related]

  • 7. SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.
    Smith LP, Hucka M, Hoops S, Finney A, Ginkel M, Myers CJ, Moraru I, Liebermeister W.
    J Integr Bioinform; 2015 Sep 04; 12(2):268. PubMed ID: 26528566
    [Abstract] [Full Text] [Related]

  • 8. Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.
    Smith LP, Moodie SL, Bergmann FT, Gillespie C, Keating SM, König M, Myers CJ, Swat MJ, Wilkinson DJ, Hucka M.
    J Integr Bioinform; 2020 Jul 20; 17(2-3):. PubMed ID: 32750035
    [Abstract] [Full Text] [Related]

  • 9. The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core.
    Gauges R, Rost U, Sahle S, Wengler K, Bergmann FT.
    J Integr Bioinform; 2015 Sep 04; 12(2):267. PubMed ID: 26528565
    [Abstract] [Full Text] [Related]

  • 10. libAnnotationSBML: a library for exploiting SBML annotations.
    Swainston N, Mendes P.
    Bioinformatics; 2009 Sep 01; 25(17):2292-3. PubMed ID: 19561017
    [Abstract] [Full Text] [Related]

  • 11. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
    Hucka M, Bergmann FT, Hoops S, Keating SM, Sahle S, Schaff JC, Smith LP, Wilkinson DJ.
    J Integr Bioinform; 2015 Sep 04; 12(2):266. PubMed ID: 26528564
    [Abstract] [Full Text] [Related]

  • 12. The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
    Chaouiya C, Keating SM, Berenguier D, Naldi A, Thieffry D, van Iersel MP, Le Novère N, Helikar T.
    J Integr Bioinform; 2015 Sep 04; 12(2):270. PubMed ID: 26528568
    [Abstract] [Full Text] [Related]

  • 13. SBMLToolbox: an SBML toolbox for MATLAB users.
    Keating SM, Bornstein BJ, Finney A, Hucka M.
    Bioinformatics; 2006 May 15; 22(10):1275-7. PubMed ID: 16574696
    [Abstract] [Full Text] [Related]

  • 14. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
    Hucka M, Bergmann FT, Chaouiya C, Dräger A, Hoops S, Keating SM, König M, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Sheriff R, Smith LP, Waltemath D, Wilkinson DJ, Zhang F.
    J Integr Bioinform; 2019 Jun 20; 16(2):. PubMed ID: 31219795
    [Abstract] [Full Text] [Related]

  • 15. Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
    Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ.
    J Integr Bioinform; 2015 Sep 04; 12(2):271. PubMed ID: 26528569
    [Abstract] [Full Text] [Related]

  • 16. SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML).
    Rodriguez N, Donizelli M, Le Novère N.
    BMC Bioinformatics; 2007 Mar 06; 8():79. PubMed ID: 17341299
    [Abstract] [Full Text] [Related]

  • 17. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z, Klipp E.
    Bioinformatics; 2006 Nov 01; 22(21):2704-5. PubMed ID: 16926221
    [Abstract] [Full Text] [Related]

  • 18. A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language.
    Nguyen T, Roehner N, Zundel Z, Myers CJ.
    ACS Synth Biol; 2016 Jun 17; 5(6):479-86. PubMed ID: 26696234
    [Abstract] [Full Text] [Related]

  • 19. MathSBML: a package for manipulating SBML-based biological models.
    Shapiro BE, Hucka M, Finney A, Doyle J.
    Bioinformatics; 2004 Nov 01; 20(16):2829-31. PubMed ID: 15087311
    [Abstract] [Full Text] [Related]

  • 20. SBMLDiagrams: a python package to process and visualize SBML layout and render.
    Xu J, Jiang J, Sauro HM.
    Bioinformatics; 2023 Jan 01; 39(1):. PubMed ID: 36370074
    [Abstract] [Full Text] [Related]

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