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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

209 related items for PubMed ID: 33720735

  • 1. APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry.
    Kasalica V, Schwämmle V, Palmblad M, Ison J, Lamprecht AL.
    J Proteome Res; 2021 Apr 02; 20(4):2157-2165. PubMed ID: 33720735
    [Abstract] [Full Text] [Related]

  • 2. Automated workflow composition in mass spectrometry-based proteomics.
    Palmblad M, Lamprecht AL, Ison J, Schwämmle V.
    Bioinformatics; 2019 Feb 15; 35(4):656-664. PubMed ID: 30060113
    [Abstract] [Full Text] [Related]

  • 3. Perspectives on automated composition of workflows in the life sciences.
    Lamprecht AL, Palmblad M, Ison J, Schwämmle V, Al Manir MS, Altintas I, Baker CJO, Ben Hadj Amor A, Capella-Gutierrez S, Charonyktakis P, Crusoe MR, Gil Y, Goble C, Griffin TJ, Groth P, Ienasescu H, Jagtap P, Kalaš M, Kasalica V, Khanteymoori A, Kuhn T, Mei H, Ménager H, Möller S, Richardson RA, Robert V, Soiland-Reyes S, Stevens R, Szaniszlo S, Verberne S, Verhoeven A, Wolstencroft K.
    F1000Res; 2021 Feb 15; 10():897. PubMed ID: 34804501
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  • 5. Proteomics Software in bio.tools: Coverage and Annotations.
    Schwämmle V, Harrow J, Ienasescu H.
    J Proteome Res; 2021 Apr 02; 20(4):1821-1825. PubMed ID: 33720718
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  • 8. Biowep: a workflow enactment portal for bioinformatics applications.
    Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
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  • 9. A graph-based approach for designing extensible pipelines.
    Rodrigues MR, Magalhães WC, Machado M, Tarazona-Santos E.
    BMC Bioinformatics; 2012 Jul 12; 13():163. PubMed ID: 22788675
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  • 12. Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms.
    Lord E, Diallo AB, Makarenkov V.
    BMC Bioinformatics; 2015 Mar 03; 16():68. PubMed ID: 25887434
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  • 13. The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
    Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C.
    Nucleic Acids Res; 2013 Jul 03; 41(Web Server issue):W557-61. PubMed ID: 23640334
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  • 14. Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.
    Garcia Castro A, Thoraval S, Garcia LJ, Ragan MA.
    BMC Bioinformatics; 2005 Apr 07; 6():87. PubMed ID: 15813976
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  • 15. Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.
    Srivastava A, Adusumilli R, Boyce H, Garijo D, Ratnakar V, Mayani R, Yu T, Machiraju R, Gil Y, Mallick P.
    Pac Symp Biocomput; 2019 Apr 07; 24():208-219. PubMed ID: 30864323
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  • 18. Conveyor: a workflow engine for bioinformatic analyses.
    Linke B, Giegerich R, Goesmann A.
    Bioinformatics; 2011 Apr 01; 27(7):903-11. PubMed ID: 21278189
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  • 19. Protein Inference Using PIA Workflows and PSI Standard File Formats.
    Uszkoreit J, Perez-Riverol Y, Eggers B, Marcus K, Eisenacher M.
    J Proteome Res; 2019 Feb 01; 18(2):741-747. PubMed ID: 30474983
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  • 20. NFTest: automated testing of Nextflow pipelines.
    Patel Y, Zhu C, Yamaguchi TN, Bugh YZ, Tian M, Holmes A, Fitz-Gibbon ST, Boutros PC.
    Bioinformatics; 2024 Feb 01; 40(2):. PubMed ID: 38341660
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