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Journal Abstract Search

156 related items for PubMed ID: 33900766

  • 1. Improving the Protein Inference from Bottom-Up Proteomic Data Using Identifications from MS1 Spectra.
    Ivanov MV, Solovyeva EM, Bubis JA, Gorshkov MV.
    J Am Soc Mass Spectrom; 2021 May 05; 32(5):1258-1262. PubMed ID: 33900766
    [Abstract] [Full Text] [Related]

  • 2. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.
    Madsen JA, Xu H, Robinson MR, Horton AP, Shaw JB, Giles DK, Kaoud TS, Dalby KN, Trent MS, Brodbelt JS.
    Mol Cell Proteomics; 2013 Sep 05; 12(9):2604-14. PubMed ID: 23695934
    [Abstract] [Full Text] [Related]

  • 3. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E, Uszkoreit J, Sachsenberg T, Pfeuffer J, Liang X, Hermjakob H, Sanchez A, Eisenacher M, Reinert K, Tabb DL, Kohlbacher O, Perez-Riverol Y.
    J Proteomics; 2017 Jan 06; 150():170-182. PubMed ID: 27498275
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  • 4. Current algorithmic solutions for peptide-based proteomics data generation and identification.
    Hoopmann MR, Moritz RL.
    Curr Opin Biotechnol; 2013 Feb 06; 24(1):31-8. PubMed ID: 23142544
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  • 6. Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics.
    Budamgunta H, Maes E, Willems H, Menschaert G, Schildermans K, Kumar AA, Boonen K, Baggerman G.
    J Chromatogr B Analyt Technol Biomed Life Sci; 2019 Aug 15; 1124():256-264. PubMed ID: 31238262
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  • 7. An algorithm for identifying multiply modified endogenous proteins using both full-scan and high-resolution tandem mass spectrometric data.
    Mazur MT, Fyhr R.
    Rapid Commun Mass Spectrom; 2011 Dec 15; 25(23):3617-26. PubMed ID: 22095511
    [Abstract] [Full Text] [Related]

  • 8. Multiplexed Post-Experimental Monoisotopic Mass Refinement (mPE-MMR) to Increase Sensitivity and Accuracy in Peptide Identifications from Tandem Mass Spectra of Cofragmentation.
    Madar IH, Ko SI, Kim H, Mun DG, Kim S, Smith RD, Lee SW.
    Anal Chem; 2017 Jan 17; 89(2):1244-1253. PubMed ID: 27966901
    [Abstract] [Full Text] [Related]

  • 9. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
    Schaffer LV, Millikin RJ, Shortreed MR, Scalf M, Smith LM.
    J Proteome Res; 2020 Aug 07; 19(8):3510-3517. PubMed ID: 32584579
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  • 11. MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra.
    Dorfer V, Pichler P, Stranzl T, Stadlmann J, Taus T, Winkler S, Mechtler K.
    J Proteome Res; 2014 Aug 01; 13(8):3679-84. PubMed ID: 24909410
    [Abstract] [Full Text] [Related]

  • 12. Enhanced Proteomic Data Analysis with MetaMorpheus.
    Miller RM, Millikin RJ, Rolfs Z, Shortreed MR, Smith LM.
    Methods Mol Biol; 2023 Aug 01; 2426():35-66. PubMed ID: 36308684
    [Abstract] [Full Text] [Related]

  • 13. Computational Methods in Mass Spectrometry-Based Proteomics.
    Li S, Tang H.
    Adv Exp Med Biol; 2016 Aug 01; 939():63-89. PubMed ID: 27807744
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  • 14. ProteinProcessor: A probabilistic analysis using mass accuracy and the MS spectrum.
    Epstein JA, Blank PS, Searle BC, Catlin AD, Cologna SM, Olson MT, Backlund PS, Coorssen JR, Yergey AL.
    Proteomics; 2016 Sep 01; 16(18):2480-90. PubMed ID: 27546229
    [Abstract] [Full Text] [Related]

  • 15. Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval.
    Boyne MT, Garcia BA, Li M, Zamdborg L, Wenger CD, Babai S, Kelleher NL.
    J Proteome Res; 2009 Jan 01; 8(1):374-9. PubMed ID: 19053528
    [Abstract] [Full Text] [Related]

  • 16. DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs.
    Rieder V, Blank-Landeshammer B, Stuhr M, Schell T, Biß K, Kollipara L, Meyer A, Pfenninger M, Westphal H, Sickmann A, Rahnenführer J.
    BMC Bioinformatics; 2017 Mar 03; 18(1):148. PubMed ID: 28253837
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  • 17. Protein Inference.
    He Z, Huang T, Zhao C, Teng B.
    Adv Exp Med Biol; 2016 Mar 03; 919():237-242. PubMed ID: 27975221
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