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150 related items for PubMed ID: 3415980

  • 1. Refinement of the solution structure of the DNA dodecamer 5'd(CGCGPATTCGCG)2 containing a stable purine-thymine base pair: combined use of nuclear magnetic resonance and restrained molecular dynamics.
    Clore GM, Oschkinat H, McLaughlin LW, Benseler F, Happ CS, Happ E, Gronenborn AM.
    Biochemistry; 1988 May 31; 27(11):4185-97. PubMed ID: 3415980
    [Abstract] [Full Text] [Related]

  • 2. Refinement of the solution structure of the DNA hexamer 5'd(GCATGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics.
    Nilges M, Clore GM, Gronenborn AM, Brunger AT, Karplus M, Nilsson L.
    Biochemistry; 1987 Jun 16; 26(12):3718-33. PubMed ID: 3651407
    [Abstract] [Full Text] [Related]

  • 3. Refinement of the solution structure of the DNA decamer 5'd(CTGGATCCAG)2: combined use of nuclear magnetic resonance and restrained molecular dynamics.
    Nilges M, Clore GM, Gronenborn AM, Piel N, McLaughlin LW.
    Biochemistry; 1987 Jun 16; 26(12):3734-44. PubMed ID: 3651408
    [Abstract] [Full Text] [Related]

  • 4. Refinement of the solution structure of the ribonucleotide 5'r(GCAUGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics.
    Happ CS, Happ E, Nilges M, Gronenborn AM, Clore GM.
    Biochemistry; 1988 Mar 08; 27(5):1735-43. PubMed ID: 2452655
    [Abstract] [Full Text] [Related]

  • 5. Analysis of the relative contributions of the nuclear Overhauser interproton distance restraints and the empirical energy function in the calculation of oligonucleotide structures using restrained molecular dynamics.
    Gronenborn AM, Clore GM.
    Biochemistry; 1989 Jul 11; 28(14):5978-84. PubMed ID: 2550066
    [Abstract] [Full Text] [Related]

  • 6. Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
    Mujeeb A, Kerwin SM, Kenyon GL, James TL.
    Biochemistry; 1993 Dec 14; 32(49):13419-31. PubMed ID: 8257678
    [Abstract] [Full Text] [Related]

  • 7. Solution structure of an oligodeoxynucleotide containing the human n-ras codon 61 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects.
    Feng B, Stone MP.
    Chem Res Toxicol; 1995 Sep 14; 8(6):821-32. PubMed ID: 7492731
    [Abstract] [Full Text] [Related]

  • 8. Refinement of the solution structure of the RNA-DNA hybrid 5'-[r(GCA)d(TGC)]2. Combined use of nuclear magnetic resonance and restrained molecular dynamics.
    Happ CS, Happ E, Clore GM, Gronenborn AM.
    FEBS Lett; 1988 Aug 15; 236(1):62-70. PubMed ID: 2456957
    [Abstract] [Full Text] [Related]

  • 9. Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.
    Nilsson L, Clore GM, Gronenborn AM, Brünger AT, Karplus M.
    J Mol Biol; 1986 Apr 05; 188(3):455-75. PubMed ID: 3016285
    [Abstract] [Full Text] [Related]

  • 10. Solution structure of the octamer motif in immunoglobulin genes via restrained molecular dynamics calculations.
    Weisz K, Shafer RH, Egan W, James TL.
    Biochemistry; 1994 Jan 11; 33(1):354-66. PubMed ID: 8286357
    [Abstract] [Full Text] [Related]

  • 11. Analysis of local helix geometry in three B-DNA decamers and eight dodecamers.
    Yanagi K, Privé GG, Dickerson RE.
    J Mol Biol; 1991 Jan 05; 217(1):201-14. PubMed ID: 1988678
    [Abstract] [Full Text] [Related]

  • 12. Refinement of the solution structure of the B DNA hexamer 5'd(C-G-T-A-C-G)2 on the basis of inter-proton distance data.
    Clore GM, Gronenborn AM, Moss DS, Tickle IJ.
    J Mol Biol; 1985 Sep 05; 185(1):219-26. PubMed ID: 2995686
    [Abstract] [Full Text] [Related]

  • 13. Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and NOE-based refinement.
    Baleja JD, Germann MW, van de Sande JH, Sykes BD.
    J Mol Biol; 1990 Oct 05; 215(3):411-28. PubMed ID: 2231713
    [Abstract] [Full Text] [Related]

  • 14. The three-dimensional structure in solution (pH 5.8) of a DNA 9-mer duplex containing 1,N2-propanodeoxyguanosine opposite deoxyadenosine. Restrained molecular dynamics and NOE-based refinement calculations.
    Huang P, Eisenberg M.
    Biochemistry; 1992 Jul 21; 31(28):6518-32. PubMed ID: 1633163
    [Abstract] [Full Text] [Related]

  • 15. Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting.
    Schmitz U, Sethson I, Egan WM, James TL.
    J Mol Biol; 1992 Sep 20; 227(2):510-31. PubMed ID: 1404366
    [Abstract] [Full Text] [Related]

  • 16. The structure of the double-stranded RNA pentamer 5'(CACAG) . 5'(CUGUG) determined by nuclear Overhauser enhancement measurements: interproton distance determination and structure refinement on the basis of X-ray coordinates.
    Clore GM, Gronenborn AM, McLaughlin LW.
    Eur J Biochem; 1985 Aug 15; 151(1):153-65. PubMed ID: 2992954
    [Abstract] [Full Text] [Related]

  • 17. Solution structure of phage lambda half-operator DNA by use of NMR, restrained molecular dynamics, and NOE-based refinement.
    Baleja JD, Pon RT, Sykes BD.
    Biochemistry; 1990 May 22; 29(20):4828-39. PubMed ID: 2141998
    [Abstract] [Full Text] [Related]

  • 18. Solution structure of the EcoRI DNA octamer containing 5-fluorouracil via restrained molecular dynamics using distance and torsion angle constraints extracted from NMR spectral simulations.
    Stolarski R, Egan W, James TL.
    Biochemistry; 1992 Aug 11; 31(31):7027-42. PubMed ID: 1643037
    [Abstract] [Full Text] [Related]

  • 19. Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure.
    Ulyanov NB, Schmitz U, James TL.
    J Biomol NMR; 1993 Sep 11; 3(5):547-68. PubMed ID: 8219740
    [Abstract] [Full Text] [Related]

  • 20. The solution structure of a B-DNA undecamer comprising a portion of the specific target site for the cAMP receptor protein in the gal operon. Refinement on the basis of interproton distance data.
    Clore GM, Gronenborn AM.
    EMBO J; 1985 Mar 11; 4(3):829-35. PubMed ID: 3891324
    [Abstract] [Full Text] [Related]

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