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Journal Abstract Search

147 related items for PubMed ID: 34375285

  • 1. An Effective Swarm Intelligence Optimization Algorithm for Flexible Ligand Docking.
    Li C, Sun J, Li LW, Wu X, Palade V.
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(5):2672-2684. PubMed ID: 34375285
    [Abstract] [Full Text] [Related]

  • 2. Diversity-guided Lamarckian random drift particle swarm optimization for flexible ligand docking.
    Li C, Sun J, Palade V.
    BMC Bioinformatics; 2020 Jul 06; 21(1):286. PubMed ID: 32631216
    [Abstract] [Full Text] [Related]

  • 3. Entropy-based lamarckian quantum-behaved particle swarm optimization for flexible ligand docking.
    You Q, Li C, Sun J, Palade V, Pan F.
    Mol Inform; 2023 Mar 06; 42(3):e2200080. PubMed ID: 36720014
    [Abstract] [Full Text] [Related]

  • 4. MSLDOCK: Multi-Swarm Optimization for Flexible Ligand Docking and Virtual Screening.
    Li C, Sun J, Palade V.
    J Chem Inf Model; 2021 Mar 22; 61(3):1500-1515. PubMed ID: 33657798
    [Abstract] [Full Text] [Related]

  • 5. Random drift particle swarm optimisation algorithm for highly flexible protein-ligand docking.
    Fu Y, Chen Z, Sun J.
    J Theor Biol; 2018 Nov 14; 457():180-189. PubMed ID: 30170044
    [Abstract] [Full Text] [Related]

  • 6. PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking.
    Ng MC, Fong S, Siu SW.
    J Bioinform Comput Biol; 2015 Jun 14; 13(3):1541007. PubMed ID: 25800162
    [Abstract] [Full Text] [Related]

  • 7. GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking.
    Wong KM, Tai HK, Siu SWI.
    Chem Biol Drug Des; 2021 Jan 14; 97(1):97-110. PubMed ID: 32679606
    [Abstract] [Full Text] [Related]

  • 8. FIPSDock: a new molecular docking technique driven by fully informed swarm optimization algorithm.
    Liu Y, Zhao L, Li W, Zhao D, Song M, Yang Y.
    J Comput Chem; 2013 Jan 05; 34(1):67-75. PubMed ID: 22961860
    [Abstract] [Full Text] [Related]

  • 9. SODOCK: swarm optimization for highly flexible protein-ligand docking.
    Chen HM, Liu BF, Huang HL, Hwang SF, Ho SY.
    J Comput Chem; 2007 Jan 30; 28(2):612-23. PubMed ID: 17186483
    [Abstract] [Full Text] [Related]

  • 10. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V, Günther R.
    Chem Biol Drug Des; 2007 Dec 30; 70(6):475-84. PubMed ID: 17986206
    [Abstract] [Full Text] [Related]

  • 11. RDPSOVina: the random drift particle swarm optimization for protein-ligand docking.
    Li J, Li C, Sun J, Palade V.
    J Comput Aided Mol Des; 2022 Jun 30; 36(6):415-425. PubMed ID: 35532815
    [Abstract] [Full Text] [Related]

  • 12. A Hybrid Cuckoo Search and Differential Evolution Approach to Protein⁻Ligand Docking.
    Lin H, Siu SWI.
    Int J Mol Sci; 2018 Oct 15; 19(10):. PubMed ID: 30326669
    [Abstract] [Full Text] [Related]

  • 13. FWAVina: A novel optimization algorithm for protein-ligand docking based on the fireworks algorithm.
    Li J, Song Y, Li F, Zhang H, Liu W.
    Comput Biol Chem; 2020 Oct 15; 88():107363. PubMed ID: 32861160
    [Abstract] [Full Text] [Related]

  • 14. Chaos-embedded particle swarm optimization approach for protein-ligand docking and virtual screening.
    Tai HK, Jusoh SA, Siu SWI.
    J Cheminform; 2018 Dec 14; 10(1):62. PubMed ID: 30552524
    [Abstract] [Full Text] [Related]

  • 15. The Performance of Several Docking Programs at Reproducing Protein-Macrolide-Like Crystal Structures.
    Castro-Alvarez A, Costa AM, Vilarrasa J.
    Molecules; 2017 Jan 17; 22(1):. PubMed ID: 28106755
    [Abstract] [Full Text] [Related]

  • 16. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
    Ravindranath PA, Forli S, Goodsell DS, Olson AJ, Sanner MF.
    PLoS Comput Biol; 2015 Dec 17; 11(12):e1004586. PubMed ID: 26629955
    [Abstract] [Full Text] [Related]

  • 17. Insights into the Molecular Mechanisms of Protein-Ligand Interactions by Molecular Docking and Molecular Dynamics Simulation: A Case of Oligopeptide Binding Protein.
    Fu Y, Zhao J, Chen Z.
    Comput Math Methods Med; 2018 Dec 17; 2018():3502514. PubMed ID: 30627209
    [Abstract] [Full Text] [Related]

  • 18. A comparison of various optimization algorithms of protein-ligand docking programs by fitness accuracy.
    Guo L, Yan Z, Zheng X, Hu L, Yang Y, Wang J.
    J Mol Model; 2014 Jul 17; 20(7):2251. PubMed ID: 24935106
    [Abstract] [Full Text] [Related]

  • 19. Accelerating AutoDock Vina with GPUs.
    Tang S, Chen R, Lin M, Lin Q, Zhu Y, Ding J, Hu H, Ling M, Wu J.
    Molecules; 2022 May 09; 27(9):. PubMed ID: 35566391
    [Abstract] [Full Text] [Related]

  • 20. Parallel multi-swarm cooperative particle swarm optimization for protein-ligand docking and virtual screening.
    Li C, Li J, Sun J, Mao L, Palade V, Ahmad B.
    BMC Bioinformatics; 2022 May 30; 23(1):201. PubMed ID: 35637537
    [Abstract] [Full Text] [Related]

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