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Journal Abstract Search

159 related items for PubMed ID: 34813499

  • 1. Customization of a DADA2-based pipeline for fungal internal transcribed spacer 1 (ITS1) amplicon data sets.
    Rolling T, Zhai B, Frame J, Hohl TM, Taur Y.
    JCI Insight; 2022 Jan 11; 7(1):. PubMed ID: 34813499
    [Abstract] [Full Text] [Related]

  • 2. Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity.
    De Filippis F, Laiola M, Blaiotta G, Ercolini D.
    Appl Environ Microbiol; 2017 Sep 01; 83(17):. PubMed ID: 28625991
    [Abstract] [Full Text] [Related]

  • 3. CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences.
    Gdanetz K, Benucci GMN, Vande Pol N, Bonito G.
    BMC Bioinformatics; 2017 Dec 06; 18(1):538. PubMed ID: 29212440
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  • 4. Mycobiome: Approaches to analysis of intestinal fungi.
    Tang J, Iliev ID, Brown J, Underhill DM, Funari VA.
    J Immunol Methods; 2015 Jun 06; 421():112-121. PubMed ID: 25891793
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  • 5. ITS1 versus ITS2 as DNA metabarcodes for fungi.
    Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H.
    Mol Ecol Resour; 2013 Mar 06; 13(2):218-24. PubMed ID: 23350562
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  • 6. Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences.
    Deshpande V, Wang Q, Greenfield P, Charleston M, Porras-Alfaro A, Kuske CR, Cole JR, Midgley DJ, Tran-Dinh N.
    Mycologia; 2016 Mar 06; 108(1):1-5. PubMed ID: 26553774
    [Abstract] [Full Text] [Related]

  • 7. Mycofier: a new machine learning-based classifier for fungal ITS sequences.
    Delgado-Serrano L, Restrepo S, Bustos JR, Zambrano MM, Anzola JM.
    BMC Res Notes; 2016 Aug 11; 9(1):402. PubMed ID: 27516337
    [Abstract] [Full Text] [Related]

  • 8. Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities.
    Bokulich NA, Mills DA.
    Appl Environ Microbiol; 2013 Apr 11; 79(8):2519-26. PubMed ID: 23377949
    [Abstract] [Full Text] [Related]

  • 9. The ITS region as a target for characterization of fungal communities using emerging sequencing technologies.
    Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E.
    FEMS Microbiol Lett; 2009 Jul 11; 296(1):97-101. PubMed ID: 19459974
    [Abstract] [Full Text] [Related]

  • 10. Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error.
    Porter TM, Golding GB.
    PLoS One; 2012 Jul 11; 7(4):e35749. PubMed ID: 22558215
    [Abstract] [Full Text] [Related]

  • 11. Exploring the accuracy of amplicon-based internal transcribed spacer markers for a fungal community.
    Li S, Deng Y, Wang Z, Zhang Z, Kong X, Zhou W, Yi Y, Qu Y.
    Mol Ecol Resour; 2020 Jan 11; 20(1):170-184. PubMed ID: 31599091
    [Abstract] [Full Text] [Related]

  • 12. Assessment of ribosomal large-subunit D1-D2, internal transcribed spacer 1, and internal transcribed spacer 2 regions as targets for molecular identification of medically important Aspergillus species.
    Hinrikson HP, Hurst SF, Lott TJ, Warnock DW, Morrison CJ.
    J Clin Microbiol; 2005 May 11; 43(5):2092-103. PubMed ID: 15872227
    [Abstract] [Full Text] [Related]

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  • 14. Step-by-Step Pipeline for the Ecological Analysis of Endophytic Fungi using ITS nrDNA Data.
    Montero-Vargas M, Escudero-Leyva E, Díaz-Valerio S, Chaverri P.
    Curr Protoc Microbiol; 2020 Mar 11; 56(1):e96. PubMed ID: 31910332
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  • 19. Novel ITS1 Fungal Primers for Characterization of the Mycobiome.
    Usyk M, Zolnik CP, Patel H, Levi MH, Burk RD.
    mSphere; 2017 Mar 11; 2(6):. PubMed ID: 29242834
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