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Journal Abstract Search

357 related items for PubMed ID: 35138128

  • 1. The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible.
    van Heusden P, Mashologu Z, Lose T, Warren R, Christoffels A.
    mSphere; 2022 Feb 23; 7(1):e0099121. PubMed ID: 35138128
    [Abstract] [Full Text] [Related]

  • 2. Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries.
    Rivière E, Heupink TH, Ismail N, Dippenaar A, Clarke C, Abebe G, Heusden P, Warren R, Meehan CJ, Van Rie A.
    Brief Bioinform; 2021 Jul 20; 22(4):. PubMed ID: 33009560
    [Abstract] [Full Text] [Related]

  • 3. Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments.
    Menegidio FB, Aciole Barbosa D, Gonçalves RDS, Nishime MM, Jabes DL, Costa de Oliveira R, Nunes LR.
    Gigascience; 2019 Apr 01; 8(4):. PubMed ID: 31222200
    [Abstract] [Full Text] [Related]

  • 4. A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches.
    Bogaerts B, Delcourt T, Soetaert K, Boarbi S, Ceyssens PJ, Winand R, Van Braekel J, De Keersmaecker SCJ, Roosens NHC, Marchal K, Mathys V, Vanneste K.
    J Clin Microbiol; 2021 May 19; 59(6):. PubMed ID: 33789960
    [Abstract] [Full Text] [Related]

  • 5. Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation.
    Colman RE, Mace A, Seifert M, Hetzel J, Mshaiel H, Suresh A, Lemmer D, Engelthaler DM, Catanzaro DG, Young AG, Denkinger CM, Rodwell TC.
    PLoS Med; 2019 Apr 19; 16(4):e1002794. PubMed ID: 31039166
    [Abstract] [Full Text] [Related]

  • 6. ReGaTE: Registration of Galaxy Tools in Elixir.
    Doppelt-Azeroual O, Mareuil F, Deveaud E, Kalaš M, Soranzo N, van den Beek M, Grüning B, Ison J, Ménager H.
    Gigascience; 2017 Jun 01; 6(6):1-4. PubMed ID: 28402416
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  • 10. Sequence database versioning for command line and Galaxy bioinformatics servers.
    Dooley DM, Petkau AJ, Van Domselaar G, Hsiao WW.
    Bioinformatics; 2016 Apr 15; 32(8):1275-7. PubMed ID: 26656932
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  • 12. Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur.
    Hiltemann SD, Boers SA, van der Spek PJ, Jansen R, Hays JP, Stubbs AP.
    Gigascience; 2019 Feb 01; 8(2):. PubMed ID: 30597007
    [Abstract] [Full Text] [Related]

  • 13. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.
    Kim B, Ali T, Lijeron C, Afgan E, Krampis K.
    Gigascience; 2017 Aug 01; 6(8):1-7. PubMed ID: 28854616
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  • 15. wft4galaxy: a workflow testing tool for galaxy.
    Piras ME, Pireddu L, Zanetti G.
    Bioinformatics; 2017 Dec 01; 33(23):3805-3807. PubMed ID: 29036536
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  • 17. TransFlow: a Snakemake workflow for transmission analysis of Mycobacterium tuberculosis whole-genome sequencing data.
    Pan J, Li X, Zhang M, Lu Y, Zhu Y, Wu K, Wu Y, Wang W, Chen B, Liu Z, Wang X, Gao J.
    Bioinformatics; 2023 Jan 01; 39(1):. PubMed ID: 36469333
    [Abstract] [Full Text] [Related]

  • 18. An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data.
    Disratthakit A, Toyo-Oka L, Thawong P, Paiboonsiri P, Wichukjinda N, Ajawatanawong P, Thipkrua N, Suthum K, Palittapongarnpim P, Tokunaga K, Mahasirimongkol S.
    Infect Genet Evol; 2020 Apr 01; 79():104152. PubMed ID: 31881359
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  • 19. Biowep: a workflow enactment portal for bioinformatics applications.
    Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
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  • 20. Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs.
    Phelan JE, O'Sullivan DM, Machado D, Ramos J, Oppong YEA, Campino S, O'Grady J, McNerney R, Hibberd ML, Viveiros M, Huggett JF, Clark TG.
    Genome Med; 2019 Jun 24; 11(1):41. PubMed ID: 31234910
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