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Journal Abstract Search

203 related items for PubMed ID: 35460274

  • 1. SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome-specific k-mers.
    Jia KH, Wang ZX, Wang L, Li GY, Zhang W, Wang XL, Xu FJ, Jiao SQ, Zhou SS, Liu H, Ma Y, Bi G, Zhao W, El-Kassaby YA, Porth I, Li G, Zhang RG, Mao JF.
    New Phytol; 2022 Jul; 235(2):801-809. PubMed ID: 35460274
    [Abstract] [Full Text] [Related]

  • 2. Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations.
    Zhang RG, Shang HY, Jia KH, Ma YP.
    Brief Bioinform; 2023 Nov 22; 25(1):. PubMed ID: 38189536
    [Abstract] [Full Text] [Related]

  • 3. Differences between diploid donors are the main contributing factor for subgenome asymmetry measured in either gene ratio or relative diversity in allopolyploids.
    Ye X, Hu H, Zhou H, Jiang Y, Gao S, Yuan Z, Stiller J, Li C, Chen G, Liu Y, Wei Y, Zheng YL, Wang YG, Liu C.
    Genome; 2021 Sep 22; 64(9):847-856. PubMed ID: 33661713
    [Abstract] [Full Text] [Related]

  • 4. PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution.
    Gordon SP, Levy JJ, Vogel JP.
    BMC Genomics; 2019 Jul 12; 20(1):580. PubMed ID: 31299888
    [Abstract] [Full Text] [Related]

  • 5. The causes and consequences of subgenome dominance in hybrids and recent polyploids.
    Bird KA, VanBuren R, Puzey JR, Edger PP.
    New Phytol; 2018 Oct 12; 220(1):87-93. PubMed ID: 29882360
    [Abstract] [Full Text] [Related]

  • 6. Distinct nucleotide patterns among three subgenomes of bread wheat and their potential origins during domestication after allopolyploidization.
    Zhao Y, Dong L, Jiang C, Wang X, Xie J, Rashid MAR, Liu Y, Li M, Bu Z, Wang H, Ma X, Sun S, Wang X, Bo C, Zhou T, Kong L.
    BMC Biol; 2020 Dec 02; 18(1):188. PubMed ID: 33267868
    [Abstract] [Full Text] [Related]

  • 7. HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids.
    Mithani A, Belfield EJ, Brown C, Jiang C, Leach LJ, Harberd NP.
    BMC Genomics; 2013 Sep 24; 14():653. PubMed ID: 24063258
    [Abstract] [Full Text] [Related]

  • 8. Does one subgenome become dominant in the formation and evolution of a polyploid?
    Liu C, Wang YG.
    Ann Bot; 2023 Feb 07; 131(1):11-16. PubMed ID: 35291007
    [Abstract] [Full Text] [Related]

  • 9. Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry.
    Yang X, Yu H, Sun W, Ding L, Li J, Cheema J, Ramirez-Gonzalez R, Zhao X, Martín AC, Lu F, Liu B, Uauy C, Ding Y, Zhang H.
    Genome Biol; 2021 Nov 30; 22(1):326. PubMed ID: 34847934
    [Abstract] [Full Text] [Related]

  • 10. Allopolyploid subgenome identification and implications for evolutionary analysis.
    Session AM.
    Trends Genet; 2024 Jul 30; 40(7):621-631. PubMed ID: 38637269
    [Abstract] [Full Text] [Related]

  • 11. Homology-mediated inter-chromosomal interactions in hexaploid wheat lead to specific subgenome territories following polyploidization and introgression.
    Jia J, Xie Y, Cheng J, Kong C, Wang M, Gao L, Zhao F, Guo J, Wang K, Li G, Cui D, Hu T, Zhao G, Wang D, Ru Z, Zhang Y.
    Genome Biol; 2021 Jan 08; 22(1):26. PubMed ID: 33419466
    [Abstract] [Full Text] [Related]

  • 12. Prediction of Subgenome Additive and Interaction Effects in Allohexaploid Wheat.
    Santantonio N, Jannink JL, Sorrells M.
    G3 (Bethesda); 2019 Mar 07; 9(3):685-698. PubMed ID: 30455185
    [Abstract] [Full Text] [Related]

  • 13. One subgenome to rule them all: underlying mechanisms of subgenome dominance.
    Alger EI, Edger PP.
    Curr Opin Plant Biol; 2020 Apr 07; 54():108-113. PubMed ID: 32344327
    [Abstract] [Full Text] [Related]

  • 14. Maternal dominance contributes to subgenome differentiation in allopolyploid fishes.
    Xu MR, Liao ZY, Brock JR, Du K, Li GY, Chen ZQ, Wang YH, Gao ZN, Agarwal G, Wei KH, Shao F, Pang S, Platts AE, van de Velde J, Lin HM, Teresi SJ, Bird K, Niederhuth CE, Xu JG, Yu GH, Yang JY, Dai SF, Nelson A, Braasch I, Zhang XG, Schartl M, Edger PP, Han MJ, Zhang HH.
    Nat Commun; 2023 Dec 15; 14(1):8357. PubMed ID: 38102128
    [Abstract] [Full Text] [Related]

  • 15. Little evidence for homoeologous gene conversion and homoeologous exchange events in Gossypium allopolyploids.
    Conover JL, Grover CE, Sharbrough J, Sloan DB, Peterson DG, Wendel JF.
    Am J Bot; 2024 Aug 15; 111(8):e16386. PubMed ID: 39107998
    [Abstract] [Full Text] [Related]

  • 16. Genome shock in a synthetic allotetraploid wheat invokes subgenome-partitioned gene regulation, meiotic instability, and karyotype variation.
    Sha Y, Li Y, Zhang D, Lv R, Wang H, Wang R, Ji H, Li S, Gong L, Li N, Liu B.
    J Exp Bot; 2023 Sep 29; 74(18):5547-5563. PubMed ID: 37379452
    [Abstract] [Full Text] [Related]

  • 17. Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences.
    Leal JL, Milesi P, Salojärvi J, Lascoux M.
    Syst Biol; 2023 Jun 16; 72(2):372-390. PubMed ID: 36932679
    [Abstract] [Full Text] [Related]

  • 18. Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group.
    Ozkan H, Levy AA, Feldman M.
    Plant Cell; 2001 Aug 16; 13(8):1735-47. PubMed ID: 11487689
    [Abstract] [Full Text] [Related]

  • 19. Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome.
    Li LF, Zhang ZB, Wang ZH, Li N, Sha Y, Wang XF, Ding N, Li Y, Zhao J, Wu Y, Gong L, Mafessoni F, Levy AA, Liu B.
    Mol Plant; 2022 Mar 07; 15(3):488-503. PubMed ID: 34979290
    [Abstract] [Full Text] [Related]

  • 20. Frequent allopolyploidy with distant progenitors in the moss genera Physcomitrium and Entosthodon (Funariaceae) identified via subgenome phasing of targeted nuclear genes.
    Patel N, Medina R, Williams LD, Lemieux O, Goffinet B, Johnson MG.
    Evolution; 2023 Dec 02; 77(12):2561-2575. PubMed ID: 37740404
    [Abstract] [Full Text] [Related]

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