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Journal Abstract Search

208 related items for PubMed ID: 35622332

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  • 4. AIRR Community Standardized Representations for Annotated Immune Repertoires.
    Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA, AIRR Community, Christley S, Laserson U.
    Front Immunol; 2018; 9():2206. PubMed ID: 30323809
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  • 8. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
    Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH.
    Front Immunol; 2018; 9():1877. PubMed ID: 30166985
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  • 9. nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
    Gabernet G, Marquez S, Bjornson R, Peltzer A, Meng H, Aron E, Lee NY, Jensen CG, Ladd D, Polster M, Hanssen F, Heumos S, nf-core community, Yaari G, Kowarik MC, Nahnsen S, Kleinstein SH.
    PLoS Comput Biol; 2024 Jul; 20(7):e1012265. PubMed ID: 39058741
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  • 11. Profiling genes encoding the adaptive immune receptor repertoire with gAIRR Suite.
    Lin MJ, Lin YC, Chen NC, Luo AC, Lai SK, Hsu CL, Hsu JS, Chen CY, Yang WS, Chen PL.
    Front Immunol; 2022 Jul; 13():922513. PubMed ID: 36159868
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  • 15. Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community.
    Gupta N, Lindeman I, Reinhardt S, Mariotti-Ferrandiz E, Mujangi-Ebeka K, Martins-Taylor K, Eugster A.
    Methods Mol Biol; 2022 Jul; 2453():379-421. PubMed ID: 35622336
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  • 17. The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons.
    Christley S, Aguiar A, Blanck G, Breden F, Bukhari SAC, Busse CE, Jaglale J, Harikrishnan SL, Laserson U, Peters B, Rocha A, Schramm CA, Taylor S, Vander Heiden JA, Zimonja B, Watson CT, Corrie B, Cowell LG.
    Front Big Data; 2020 Jul; 3():22. PubMed ID: 33693395
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  • 19. ViCloD, an interactive web tool for visualizing B cell repertoires and analyzing intraclonal diversities: application to human B-cell tumors.
    Jeusset L, Abdollahi N, Verny T, Armand M, De Septenville AL, Davi F, Bernardes JS.
    NAR Genom Bioinform; 2023 Jun; 5(2):lqad064. PubMed ID: 37388820
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  • 20. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to Repertoire Analysis.
    Marquez S, Babrak L, Greiff V, Hoehn KB, Lees WD, Luning Prak ET, Miho E, Rosenfeld AM, Schramm CA, Stervbo U, AIRR Community.
    Methods Mol Biol; 2022 Jun; 2453():297-316. PubMed ID: 35622333
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