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198 related items for PubMed ID: 35655139

  • 1. Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance.
    Wang X, Dong Q, Chen G, Zhang J, Liu Y, Cai Y.
    BMC Genomics; 2022 Jun 02; 23(1):416. PubMed ID: 35655139
    [Abstract] [Full Text] [Related]

  • 2. Optimality of circular codes versus the genetic code after frameshift errors.
    Dila G, Michel CJ, Thompson JD.
    Biosystems; 2020 Jul 02; 195():104134. PubMed ID: 32251681
    [Abstract] [Full Text] [Related]

  • 3. On the Origin of Frameshift-Robustness of the Standard Genetic Code.
    Xu H, Zhang J.
    Mol Biol Evol; 2021 Sep 27; 38(10):4301-4309. PubMed ID: 34043802
    [Abstract] [Full Text] [Related]

  • 4. Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm.
    Błażej P, Wnętrzak M, Mackiewicz D, Mackiewicz P.
    PLoS One; 2018 Sep 27; 13(8):e0201715. PubMed ID: 30092017
    [Abstract] [Full Text] [Related]

  • 5. Optimization of the standard genetic code in terms of two mutation types: Point mutations and frameshifts.
    Wnętrzak M, Błażej P, Mackiewicz P.
    Biosystems; 2019 Jul 27; 181():44-50. PubMed ID: 31042561
    [Abstract] [Full Text] [Related]

  • 6. The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm.
    Wnętrzak M, Błażej P, Mackiewicz D, Mackiewicz P.
    BMC Evol Biol; 2018 Dec 13; 18(1):192. PubMed ID: 30545289
    [Abstract] [Full Text] [Related]

  • 7. A computational screen for alternative genetic codes in over 250,000 genomes.
    Shulgina Y, Eddy SR.
    Elife; 2021 Nov 09; 10():. PubMed ID: 34751130
    [Abstract] [Full Text] [Related]

  • 8. Overlapping genetic codes for overlapping frameshifted genes in Testudines, and Lepidochelys olivacea as special case.
    Seligmann H.
    Comput Biol Chem; 2012 Dec 09; 41():18-34. PubMed ID: 23137449
    [Abstract] [Full Text] [Related]

  • 9. A basis for new approaches to the chemotherapy of AIDS: novel genes in HIV-1 potentially encode selenoproteins expressed by ribosomal frameshifting and termination suppression.
    Taylor EW, Ramanathan CS, Jalluri RK, Nadimpalli RG.
    J Med Chem; 1994 Aug 19; 37(17):2637-54. PubMed ID: 8064794
    [Abstract] [Full Text] [Related]

  • 10. The genetic code is nearly optimal for allowing additional information within protein-coding sequences.
    Itzkovitz S, Alon U.
    Genome Res; 2007 Apr 19; 17(4):405-12. PubMed ID: 17293451
    [Abstract] [Full Text] [Related]

  • 11. Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code.
    Błażej P, Wnętrzak M, Mackiewicz D, Gagat P, Mackiewicz P.
    J Theor Biol; 2019 Mar 07; 464():21-32. PubMed ID: 30579955
    [Abstract] [Full Text] [Related]

  • 12. Optimality in the standard genetic code is robust with respect to comparison code sets.
    Wichmann S, Ardern Z.
    Biosystems; 2019 Nov 07; 185():104023. PubMed ID: 31520875
    [Abstract] [Full Text] [Related]

  • 13. Frameshifting preserves key physicochemical properties of proteins.
    Bartonek L, Braun D, Zagrovic B.
    Proc Natl Acad Sci U S A; 2020 Mar 17; 117(11):5907-5912. PubMed ID: 32127487
    [Abstract] [Full Text] [Related]

  • 14. Evolution of the genetic code: partial optimization of a random code for robustness to translation error in a rugged fitness landscape.
    Novozhilov AS, Wolf YI, Koonin EV.
    Biol Direct; 2007 Oct 23; 2():24. PubMed ID: 17956616
    [Abstract] [Full Text] [Related]

  • 15. Is the Genetic Code Optimized for Resource Conservation?
    Xu H, Zhang J.
    Mol Biol Evol; 2021 Oct 27; 38(11):5122-5126. PubMed ID: 34383940
    [Abstract] [Full Text] [Related]

  • 16. Model of Genetic Code Structure Evolution under Various Types of Codon Reading.
    Błażej P, Pawlak K, Mackiewicz D, Mackiewicz P.
    Int J Mol Sci; 2022 Feb 01; 23(3):. PubMed ID: 35163612
    [Abstract] [Full Text] [Related]

  • 17. Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation.
    López JL, Lozano MJ, Fabre ML, Lagares A.
    mBio; 2020 Jul 21; 11(4):. PubMed ID: 32694138
    [Abstract] [Full Text] [Related]

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  • 19. Codon size reduction as the origin of the triplet genetic code.
    Baranov PV, Venin M, Provan G.
    PLoS One; 2009 May 27; 4(5):e5708. PubMed ID: 19479032
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