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Journal Abstract Search

185 related items for PubMed ID: 35718090

  • 1. VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment.
    Raju RS, Al Nahid A, Chondrow Dev P, Islam R.
    Genomics; 2022 Jul; 114(4):110414. PubMed ID: 35718090
    [Abstract] [Full Text] [Related]

  • 2. The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.
    Aiewsakun P, Simmonds P.
    Microbiome; 2018 Feb 20; 6(1):38. PubMed ID: 29458427
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  • 4. A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes.
    Garcia BJ, Simha R, Garvin M, Furches A, Jones P, Gazolla JGFM, Hyatt PD, Schadt CW, Pelletier D, Jacobson D.
    Comput Struct Biotechnol J; 2021 Feb 20; 19():5911-5919. PubMed ID: 34849195
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  • 6. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB.
    Gigascience; 2017 Mar 01; 6(3):1-10. PubMed ID: 28327976
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  • 8. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J, Ahlgren NA, Lu YY, Fuhrman JA, Sun F.
    Microbiome; 2017 Jul 06; 5(1):69. PubMed ID: 28683828
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  • 15. Metagenomic exploration of viruses throughout the Indian Ocean.
    Williamson SJ, Allen LZ, Lorenzi HA, Fadrosh DW, Brami D, Thiagarajan M, McCrow JP, Tovchigrechko A, Yooseph S, Venter JC.
    PLoS One; 2012 Jul 06; 7(10):e42047. PubMed ID: 23082107
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  • 16. Virus classification - where do you draw the line?
    Simmonds P, Aiewsakun P.
    Arch Virol; 2018 Aug 06; 163(8):2037-2046. PubMed ID: 30039318
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  • 17. Taxometer: Improving taxonomic classification of metagenomics contigs.
    Kutuzova S, Nielsen M, Piera P, Nissen JN, Rasmussen S.
    Nat Commun; 2024 Sep 27; 15(1):8357. PubMed ID: 39333501
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  • 19. Scalable metagenomic taxonomy classification using a reference genome database.
    Ames SK, Hysom DA, Gardner SN, Lloyd GS, Gokhale MB, Allen JE.
    Bioinformatics; 2013 Sep 15; 29(18):2253-60. PubMed ID: 23828782
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