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Journal Abstract Search

171 related items for PubMed ID: 35871888

  • 1. On the current failure-but bright future-of topology-driven biological network alignment.
    Wang S, Chen X, Frederisy BJ, Mbakogu BA, Kanne AD, Khosravi P, Hayes WB.
    Adv Protein Chem Struct Biol; 2022; 131():1-44. PubMed ID: 35871888
    [Abstract] [Full Text] [Related]

  • 2. SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment.
    Wang S, Atkinson GRS, Hayes WB.
    NPJ Syst Biol Appl; 2022 Jul 20; 8(1):25. PubMed ID: 35859153
    [Abstract] [Full Text] [Related]

  • 3. A protein-protein interaction network aligner study in the multi-objective domain.
    Menor-Flores M, Vega-Rodríguez MA.
    Comput Methods Programs Biomed; 2024 Jun 20; 250():108188. PubMed ID: 38657382
    [Abstract] [Full Text] [Related]

  • 4. Exact p-values for global network alignments via combinatorial analysis of shared GO terms : REFANGO: Rigorous Evaluation of Functional Alignments of Networks using Gene Ontology.
    Hayes WB.
    J Math Biol; 2024 Mar 29; 88(5):50. PubMed ID: 38551701
    [Abstract] [Full Text] [Related]

  • 5. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 6. SANA: simulated annealing far outperforms many other search algorithms for biological network alignment.
    Mamano N, Hayes WB.
    Bioinformatics; 2017 Jul 15; 33(14):2156-2164. PubMed ID: 28203713
    [Abstract] [Full Text] [Related]

  • 7. GraphCrunch 2: Software tool for network modeling, alignment and clustering.
    Kuchaiev O, Stevanović A, Hayes W, Pržulj N.
    BMC Bioinformatics; 2011 Jan 19; 12():24. PubMed ID: 21244715
    [Abstract] [Full Text] [Related]

  • 8. Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization.
    Hashemifar S, Huang Q, Xu J.
    J Comput Biol; 2016 Nov 19; 23(11):903-911. PubMed ID: 27428933
    [Abstract] [Full Text] [Related]

  • 9. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 10. SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments.
    Hayes WB, Mamano N.
    Bioinformatics; 2018 Apr 15; 34(8):1345-1352. PubMed ID: 29228175
    [Abstract] [Full Text] [Related]

  • 11. SAlign-a structure aware method for global PPI network alignment.
    Ayub U, Haider I, Naveed H.
    BMC Bioinformatics; 2020 Nov 04; 21(1):500. PubMed ID: 33148180
    [Abstract] [Full Text] [Related]

  • 12. An Introductory Guide to Aligning Networks Using SANA, the Simulated Annealing Network Aligner.
    Hayes WB.
    Methods Mol Biol; 2020 Nov 04; 2074():263-284. PubMed ID: 31583643
    [Abstract] [Full Text] [Related]

  • 13. Integrative network alignment reveals large regions of global network similarity in yeast and human.
    Kuchaiev O, Przulj N.
    Bioinformatics; 2011 May 15; 27(10):1390-6. PubMed ID: 21414992
    [Abstract] [Full Text] [Related]

  • 14. Data-driven network alignment.
    Gu S, Milenković T.
    PLoS One; 2020 May 15; 15(7):e0234978. PubMed ID: 32614833
    [Abstract] [Full Text] [Related]

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  • 17. Unified Alignment of Protein-Protein Interaction Networks.
    Malod-Dognin N, Ban K, Pržulj N.
    Sci Rep; 2017 Apr 19; 7(1):953. PubMed ID: 28424527
    [Abstract] [Full Text] [Related]

  • 18. Index-Based Network Aligner of Protein-Protein Interaction Networks.
    Elmsallati A, Msalati A, Kalita J.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Apr 19; 15(1):330-336. PubMed ID: 28113986
    [Abstract] [Full Text] [Related]

  • 19. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 20. PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
    Kalecky K, Cho YR.
    Bioinformatics; 2018 Jul 01; 34(13):i537-i546. PubMed ID: 29949962
    [Abstract] [Full Text] [Related]

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