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Journal Abstract Search

227 related items for PubMed ID: 35879648

  • 1. A supervised protein complex prediction method with network representation learning and gene ontology knowledge.
    Wang X, Zhang Y, Zhou P, Liu X.
    BMC Bioinformatics; 2022 Jul 25; 23(1):300. PubMed ID: 35879648
    [Abstract] [Full Text] [Related]

  • 2. Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.
    Liu X, Yang Z, Sang S, Zhou Z, Wang L, Zhang Y, Lin H, Wang J, Xu B.
    BMC Bioinformatics; 2018 Sep 21; 19(1):332. PubMed ID: 30241459
    [Abstract] [Full Text] [Related]

  • 3. Identification of protein complexes from multi-relationship protein interaction networks.
    Li X, Wang J, Zhao B, Wu FX, Pan Y.
    Hum Genomics; 2016 Jul 25; 10 Suppl 2(Suppl 2):17. PubMed ID: 27461193
    [Abstract] [Full Text] [Related]

  • 4. Molecular complex detection in protein interaction networks through reinforcement learning.
    Palukuri MV, Patil RS, Marcotte EM.
    BMC Bioinformatics; 2023 Aug 02; 24(1):306. PubMed ID: 37532987
    [Abstract] [Full Text] [Related]

  • 5. Protein complex prediction in large ontology attributed protein-protein interaction networks.
    Zhang Y, Lin H, Yang Z, Wang J, Li Y, Xu B.
    IEEE/ACM Trans Comput Biol Bioinform; 2013 Aug 02; 10(3):729-41. PubMed ID: 24091405
    [Abstract] [Full Text] [Related]

  • 6. Protein Complexes Detection Based on Semi-Supervised Network Embedding Model.
    Zhu J, Zheng Z, Yang M, Fung GPC, Huang C.
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Aug 02; 18(2):797-803. PubMed ID: 31581089
    [Abstract] [Full Text] [Related]

  • 7. Predicting protein complex in protein interaction network - a supervised learning based method.
    Yu F, Yang Z, Tang N, Lin H, Wang J, Yang Z.
    BMC Syst Biol; 2014 Aug 02; 8 Suppl 3(Suppl 3):S4. PubMed ID: 25349902
    [Abstract] [Full Text] [Related]

  • 8. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
    Ou-Yang L, Yan H, Zhang XF.
    BMC Bioinformatics; 2017 Dec 01; 18(Suppl 13):463. PubMed ID: 29219066
    [Abstract] [Full Text] [Related]

  • 9. From communities to protein complexes: A local community detection algorithm on PPI networks.
    Dilmaghani S, Brust MR, Ribeiro CHC, Kieffer E, Danoy G, Bouvry P.
    PLoS One; 2022 Dec 01; 17(1):e0260484. PubMed ID: 35085263
    [Abstract] [Full Text] [Related]

  • 10. Temporal Protein Complex Identification Based on Dynamic Heterogeneous Protein Information Network Representation Learning.
    Li Z, Zhang Y, Zhou P.
    IEEE/ACM Trans Comput Biol Bioinform; 2024 Dec 01; 21(5):1154-1164. PubMed ID: 38190662
    [Abstract] [Full Text] [Related]

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  • 12. Integrating experimental and literature protein-protein interaction data for protein complex prediction.
    Zhang Y, Lin H, Yang Z, Wang J.
    BMC Genomics; 2015 Dec 01; 16 Suppl 2(Suppl 2):S4. PubMed ID: 25708571
    [Abstract] [Full Text] [Related]

  • 13. Predicting protein complexes using a supervised learning method combined with local structural information.
    Dong Y, Sun Y, Qin C.
    PLoS One; 2018 Dec 01; 13(3):e0194124. PubMed ID: 29554120
    [Abstract] [Full Text] [Related]

  • 14. A Method for Predicting Protein Complexes from Dynamic Weighted Protein-Protein Interaction Networks.
    Liu L, Sun X, Song W, Du C.
    J Comput Biol; 2018 Jun 01; 25(6):586-605. PubMed ID: 29668304
    [Abstract] [Full Text] [Related]

  • 15. A method for predicting protein complex in dynamic PPI networks.
    Zhang Y, Lin H, Yang Z, Wang J, Liu Y, Sang S.
    BMC Bioinformatics; 2016 Jul 25; 17 Suppl 7(Suppl 7):229. PubMed ID: 27454775
    [Abstract] [Full Text] [Related]

  • 16. Integrating network topology, gene expression data and GO annotation information for protein complex prediction.
    Zhang W, Xu J, Li Y, Zou X.
    J Bioinform Comput Biol; 2019 Feb 25; 17(1):1950001. PubMed ID: 30803297
    [Abstract] [Full Text] [Related]

  • 17. Construction of ontology augmented networks for protein complex prediction.
    Zhang Y, Lin H, Yang Z, Wang J.
    PLoS One; 2013 Feb 25; 8(5):e62077. PubMed ID: 23650509
    [Abstract] [Full Text] [Related]

  • 18. Protein Complex Identification Based on Heterogeneous Protein Information Network.
    Zhou P, Zhang Y, Li Z, Pang K, Zhao D.
    J Comput Biol; 2023 Sep 25; 30(9):985-998. PubMed ID: 37669441
    [Abstract] [Full Text] [Related]

  • 19. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.
    Xu B, Guan J.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Sep 25; 11(4):616-27. PubMed ID: 26356332
    [Abstract] [Full Text] [Related]

  • 20. DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding.
    Meng X, Xiang J, Zheng R, Wu FX, Li M.
    IEEE/ACM Trans Comput Biol Bioinform; 2022 Sep 25; 19(3):1592-1602. PubMed ID: 33417563
    [Abstract] [Full Text] [Related]

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