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209 related items for PubMed ID: 35946348

  • 1. Evolutionary Changes in the Chromatin Landscape Contribute to Reorganization of a Developmental Gene Network During Rapid Life History Evolution in Sea Urchins.
    Davidson PL, Byrne M, Wray GA.
    Mol Biol Evol; 2022 Sep 01; 39(9):. PubMed ID: 35946348
    [Abstract] [Full Text] [Related]

  • 2. Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris.
    Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA.
    PLoS Biol; 2016 Mar 01; 14(3):e1002391. PubMed ID: 26943850
    [Abstract] [Full Text] [Related]

  • 3. Hybrid Epigenomes Reveal Extensive Local Genetic Changes to Chromatin Accessibility Contribute to Divergence in Embryonic Gene Expression Between Species.
    Devens HR, Davidson PL, Byrne M, Wray GA.
    Mol Biol Evol; 2023 Nov 03; 40(11):. PubMed ID: 37823438
    [Abstract] [Full Text] [Related]

  • 4. Recent reconfiguration of an ancient developmental gene regulatory network in Heliocidaris sea urchins.
    Davidson PL, Guo H, Swart JS, Massri AJ, Edgar A, Wang L, Berrio A, Devens HR, Koop D, Cisternas P, Zhang H, Zhang Y, Byrne M, Fan G, Wray GA.
    Nat Ecol Evol; 2022 Dec 03; 6(12):1907-1920. PubMed ID: 36266460
    [Abstract] [Full Text] [Related]

  • 5. A comparative analysis of egg provisioning using mass spectrometry during rapid life history evolution in sea urchins.
    Davidson PL, Thompson JW, Foster MW, Moseley MA, Byrne M, Wray GA.
    Evol Dev; 2019 Jul 03; 21(4):188-204. PubMed ID: 31102332
    [Abstract] [Full Text] [Related]

  • 6. Genetic basis for divergence in developmental gene expression in two closely related sea urchins.
    Wang L, Israel JW, Edgar A, Raff RA, Raff EC, Byrne M, Wray GA.
    Nat Ecol Evol; 2020 Jun 03; 4(6):831-840. PubMed ID: 32284581
    [Abstract] [Full Text] [Related]

  • 7. Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling.
    Shashikant T, Khor JM, Ettensohn CA.
    BMC Genomics; 2018 Mar 20; 19(1):206. PubMed ID: 29558892
    [Abstract] [Full Text] [Related]

  • 8. Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma.
    Wilson KA, Andrews ME, Raff RA.
    Evol Dev; 2005 Mar 20; 7(5):401-15. PubMed ID: 16174034
    [Abstract] [Full Text] [Related]

  • 9. Single-cell transcriptomics reveals evolutionary reconfiguration of embryonic cell fate specification in the sea urchin Heliocidaris erythrogramma.
    Massri AJ, Berrio A, Afanassiev A, Greenstreet L, Pipho K, Byrne M, Schiebinger G, McClay DR, Wray GA.
    bioRxiv; 2024 May 01. PubMed ID: 38746376
    [Abstract] [Full Text] [Related]

  • 10. Evolutionary changes in sites and timing of actin gene expression in embryos of the direct- and indirect-developing sea urchins, Heliocidaris erythrogramma and H. tuberculata.
    Kissinger JC, Raff RA.
    Dev Genes Evol; 1998 Apr 01; 208(2):82-93. PubMed ID: 9569349
    [Abstract] [Full Text] [Related]

  • 11. Rapid evolution in a conserved gene family. Evolution of the actin gene family in the sea urchin genus Heliocidaris and related genera.
    Kissinger JC, Hahn JH, Raff RA.
    Mol Biol Evol; 1997 Jun 01; 14(6):654-65. PubMed ID: 9190067
    [Abstract] [Full Text] [Related]

  • 12. Major regulatory factors in the evolution of development: the roles of goosecoid and Msx in the evolution of the direct-developing sea urchin Heliocidaris erythrogramma.
    Wilson KA, Andrews ME, Rudolf Turner F, Raff RA.
    Evol Dev; 2005 Jun 01; 7(5):416-28. PubMed ID: 16174035
    [Abstract] [Full Text] [Related]

  • 13. Evolution of OTP-independent larval skeleton patterning in the direct-developing sea urchin, Heliocidaris erythrogramma.
    Zhou N, Wilson KA, Andrews ME, Kauffman JS, Raff RA.
    J Exp Zool B Mol Dev Evol; 2003 Dec 15; 300(1):58-71. PubMed ID: 14984035
    [Abstract] [Full Text] [Related]

  • 14. Structure and evolution of CyI cytoplasmic actin-encoding genes in the indirect- and direct-developing sea urchins Heliocidaris tuberculata and Heliocidaris erythrogramma.
    Hahn JH, Kissinger JC, Raff RA.
    Gene; 1995 Feb 14; 153(2):219-24. PubMed ID: 7875592
    [Abstract] [Full Text] [Related]

  • 15. Identification and prediction of developmental enhancers in sea urchin embryos.
    Arenas-Mena C, Miljovska S, Rice EJ, Gurges J, Shashikant T, Wang Z, Ercan S, Danko CG.
    BMC Genomics; 2021 Oct 19; 22(1):751. PubMed ID: 34666684
    [Abstract] [Full Text] [Related]

  • 16. Divergence of ectodermal and mesodermal gene regulatory network linkages in early development of sea urchins.
    Erkenbrack EM.
    Proc Natl Acad Sci U S A; 2016 Nov 15; 113(46):E7202-E7211. PubMed ID: 27810959
    [Abstract] [Full Text] [Related]

  • 17. Morphological evolution in sea urchin development: hybrids provide insights into the pace of evolution.
    Byrne M, Voltzow J.
    Bioessays; 2004 Apr 15; 26(4):343-7. PubMed ID: 15057932
    [Abstract] [Full Text] [Related]

  • 18. Isolation and characterization of three mRNAs enriched in embryos of the direct-developing sea urchin Heliocidaris erythrogramma: evolution of larval ectoderm.
    Haag ES, Raff RA.
    Dev Genes Evol; 1998 Jun 15; 208(4):188-204. PubMed ID: 9634485
    [Abstract] [Full Text] [Related]

  • 19. Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology.
    Ben-Tabou de-Leon S, Davidson EH.
    Wiley Interdiscip Rev Syst Biol Med; 2009 Jun 15; 1(2):237-246. PubMed ID: 20228891
    [Abstract] [Full Text] [Related]

  • 20. Evolution of the fibropellin gene family and patterns of fibropellin gene expression in sea urchin phylogeny.
    Bisgrove BW, Andrews ME, Raff RA.
    J Mol Evol; 1995 Jul 15; 41(1):34-45. PubMed ID: 7608987
    [Abstract] [Full Text] [Related]

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