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209 related items for PubMed ID: 35946348

  • 21. The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes.
    Hogan JD, Keenan JL, Luo L, Ibn-Salem J, Lamba A, Schatzberg D, Piacentino ML, Zuch DT, Core AB, Blumberg C, Timmermann B, Grau JH, Speranza E, Andrade-Navarro MA, Irie N, Poustka AJ, Bradham CA.
    Dev Biol; 2020 Apr 15; 460(2):139-154. PubMed ID: 31816285
    [Abstract] [Full Text] [Related]

  • 22. Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins.
    Hinman VF, Nguyen A, Davidson EH.
    Dev Biol; 2007 Dec 15; 312(2):584-95. PubMed ID: 17956756
    [Abstract] [Full Text] [Related]

  • 23. Regulatory punctuated equilibrium and convergence in the evolution of developmental pathways in direct-developing sea urchins.
    Raff EC, Popodi EM, Kauffman JS, Sly BJ, Turner FR, Morris VB, Raff RA.
    Evol Dev; 2003 Dec 15; 5(5):478-93. PubMed ID: 12950627
    [Abstract] [Full Text] [Related]

  • 24. Lessons from a transcription factor: Alx1 provides insights into gene regulatory networks, cellular reprogramming, and cell type evolution.
    Ettensohn CA, Guerrero-Santoro J, Khor JM.
    Curr Top Dev Biol; 2022 Dec 15; 146():113-148. PubMed ID: 35152981
    [Abstract] [Full Text] [Related]

  • 25. Mechanisms of evolutionary changes in timing, spatial expression, and mRNA processing in the msp130 gene in a direct-developing sea urchin, Heliocidaris erythrogramma.
    Klueg KM, Harkey MA, Raff RA.
    Dev Biol; 1997 Feb 01; 182(1):121-33. PubMed ID: 9028919
    [Abstract] [Full Text] [Related]

  • 26. Architecture and evolution of the cis-regulatory system of the echinoderm kirrelL gene.
    Khor JM, Ettensohn CA.
    Elife; 2022 Feb 25; 11():. PubMed ID: 35212624
    [Abstract] [Full Text] [Related]

  • 27. The genomic regulatory control of skeletal morphogenesis in the sea urchin.
    Rafiq K, Cheers MS, Ettensohn CA.
    Development; 2012 Feb 25; 139(3):579-90. PubMed ID: 22190640
    [Abstract] [Full Text] [Related]

  • 28. Co-option and dissociation in larval origins and evolution: the sea urchin larval gut.
    Love AC, Lee AE, Andrews ME, Raff RA.
    Evol Dev; 2008 Feb 25; 10(1):74-88. PubMed ID: 18184359
    [Abstract] [Full Text] [Related]

  • 29. Widespread priming of transcriptional regulatory elements by incipient accessibility or RNA polymerase II pause in early embryos of the sea urchin Strongylocentrotus purpuratus.
    Arenas-Mena C, Akin S.
    Genetics; 2023 Oct 04; 225(2):. PubMed ID: 37551428
    [Abstract] [Full Text] [Related]

  • 30. Nodal expression and heterochrony in the evolution of dorsal-ventral and left-right axes formation in the direct-developing sea urchin Heliocidaris erythrogramma.
    Smith MS, Turner FR, Raff RA.
    J Exp Zool B Mol Dev Evol; 2008 Dec 15; 310(8):609-22. PubMed ID: 18702078
    [Abstract] [Full Text] [Related]

  • 31. Genome-wide analysis of the skeletogenic gene regulatory network of sea urchins.
    Rafiq K, Shashikant T, McManus CJ, Ettensohn CA.
    Development; 2014 Feb 15; 141(4):950-61. PubMed ID: 24496631
    [Abstract] [Full Text] [Related]

  • 32. Integrative multi-omics increase resolution of the sea urchin posterior gut gene regulatory network at single-cell level.
    Voronov D, Paganos P, Magri MS, Cuomo C, Maeso I, Gómez-Skarmeta JL, Arnone MI.
    Development; 2024 Aug 15; 151(16):. PubMed ID: 39058236
    [Abstract] [Full Text] [Related]

  • 33. ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos.
    Magri MS, Voronov D, Ranđelović J, Cuomo C, Gómez-Skarmeta JL, Arnone MI.
    Methods Mol Biol; 2021 Aug 15; 2219():253-265. PubMed ID: 33074546
    [Abstract] [Full Text] [Related]

  • 34. Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation.
    Romano LA, Wray GA.
    Development; 2003 Sep 15; 130(17):4187-99. PubMed ID: 12874137
    [Abstract] [Full Text] [Related]

  • 35. From genome to anatomy: The architecture and evolution of the skeletogenic gene regulatory network of sea urchins and other echinoderms.
    Shashikant T, Khor JM, Ettensohn CA.
    Genesis; 2018 Oct 15; 56(10):e23253. PubMed ID: 30264451
    [Abstract] [Full Text] [Related]

  • 36. Direct-developing sea urchins and the evolutionary reorganization of early development.
    Raff RA.
    Bioessays; 1992 Apr 15; 14(4):211-8. PubMed ID: 1596270
    [Abstract] [Full Text] [Related]

  • 37. Adaptive evolution of bindin in the genus Heliocidaris is correlated with the shift to direct development.
    Zigler KS, Raff EC, Popodi E, Raff RA, Lessios HA.
    Evolution; 2003 Oct 15; 57(10):2293-302. PubMed ID: 14628917
    [Abstract] [Full Text] [Related]

  • 38. Developmental gene regulatory network architecture across 500 million years of echinoderm evolution.
    Hinman VF, Nguyen AT, Cameron RA, Davidson EH.
    Proc Natl Acad Sci U S A; 2003 Nov 11; 100(23):13356-61. PubMed ID: 14595011
    [Abstract] [Full Text] [Related]

  • 39. Creation of cis-regulatory elements during sea urchin evolution by co-option and optimization of a repetitive sequence adjacent to the spec2a gene.
    Dayal S, Kiyama T, Villinski JT, Zhang N, Liang S, Klein WH.
    Dev Biol; 2004 Sep 15; 273(2):436-53. PubMed ID: 15328024
    [Abstract] [Full Text] [Related]

  • 40. Patterning mechanisms in the evolution of derived developmental life histories: the role of Wnt signaling in axis formation of the direct-developing sea urchin Heliocidaris erythrogramma.
    Kauffman JS, Raff RA.
    Dev Genes Evol; 2003 Dec 15; 213(12):612-24. PubMed ID: 14618401
    [Abstract] [Full Text] [Related]

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