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Journal Abstract Search

193 related items for PubMed ID: 36275619

  • 1. A dynamical view of protein-protein complexes: Studies by molecular dynamics simulations.
    Martin J, Frezza E.
    Front Mol Biosci; 2022; 9():970109. PubMed ID: 36275619
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  • 2. Dynamics of Protein-RNA Interfaces Using All-Atom Molecular Dynamics Simulations.
    Sabei A, Hognon C, Martin J, Frezza E.
    J Phys Chem B; 2024 May 23; 128(20):4865-4886. PubMed ID: 38740056
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  • 5. Water Dynamics at Protein-Protein Interfaces: Molecular Dynamics Study of Virus-Host Receptor Complexes.
    Dutta P, Botlani M, Varma S.
    J Phys Chem B; 2014 Dec 26; 118(51):14795-807. PubMed ID: 25420132
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  • 6. On the packing density of the unbound protein-protein interaction interface and its implications in dynamics.
    Lin JJ, Lin ZL, Hwang JK, Huang TT.
    BMC Bioinformatics; 2015 Dec 26; 16 Suppl 1(Suppl 1):S7. PubMed ID: 25708145
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  • 7. Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins.
    Swapna LS, Mahajan S, de Brevern AG, Srinivasan N.
    BMC Struct Biol; 2012 May 03; 12():6. PubMed ID: 22554255
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  • 8. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
    Spacková N, Réblová K, Sponer J.
    J Phys Chem B; 2010 Aug 19; 114(32):10581-93. PubMed ID: 20701388
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  • 9. Insights from the structural analysis of protein heterodimer interfaces.
    Sowmya G, Anita S, Kangueane P.
    Bioinformation; 2011 May 07; 6(4):137-43. PubMed ID: 21572879
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  • 11. Structural changes in DNA-binding proteins on complexation.
    Poddar S, Chakravarty D, Chakrabarti P.
    Nucleic Acids Res; 2018 Apr 20; 46(7):3298-3308. PubMed ID: 29534202
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  • 15. Structure, dynamics, and interactions of jacalin. Insights from molecular dynamics simulations examined in conjunction with results of X-ray studies.
    Sharma A, Sekar K, Vijayan M.
    Proteins; 2009 Dec 20; 77(4):760-77. PubMed ID: 19544573
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  • 16. Correlation analysis of the side-chains conformational distribution in bound and unbound proteins.
    Kirys T, Ruvinsky AM, Tuzikov AV, Vakser IA.
    BMC Bioinformatics; 2012 Sep 17; 13():236. PubMed ID: 22984947
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  • 17. The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking.
    Smith GR, Sternberg MJ, Bates PA.
    J Mol Biol; 2005 Apr 15; 347(5):1077-101. PubMed ID: 15784265
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  • 18. Towards understanding the unbound state of drug compounds: Implications for the intramolecular reorganization energy upon binding.
    Foloppe N, Chen IJ.
    Bioorg Med Chem; 2016 May 15; 24(10):2159-89. PubMed ID: 27061672
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