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Journal Abstract Search

197 related items for PubMed ID: 36292670

  • 1. Optimization of Oxford Nanopore Technology Sequencing Workflow for Detection of Amplicons in Real Time Using ONT-DART Tool.
    Player R, Verratti K, Staab A, Forsyth E, Ernlund A, Joshi MS, Dunning R, Rozak D, Grady S, Goodwin B, Sozhamannan S.
    Genes (Basel); 2022 Oct 03; 13(10):. PubMed ID: 36292670
    [Abstract] [Full Text] [Related]

  • 2. Comparison of the performance of an amplicon sequencing assay based on Oxford Nanopore technology to real-time PCR assays for detecting bacterial biodefense pathogens.
    Player R, Verratti K, Staab A, Bradburne C, Grady S, Goodwin B, Sozhamannan S.
    BMC Genomics; 2020 Feb 17; 21(1):166. PubMed ID: 32066372
    [Abstract] [Full Text] [Related]

  • 3. The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.
    Zhang T, Li H, Ma S, Cao J, Liao H, Huang Q, Chen W.
    Appl Environ Microbiol; 2023 Oct 31; 89(10):e0060523. PubMed ID: 37800969
    [Abstract] [Full Text] [Related]

  • 4. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
    Leung AW, Leung HC, Wong CL, Zheng ZX, Lui WW, Luk HM, Lo IF, Luo R, Lam TW.
    BMC Med Genomics; 2022 Mar 04; 15(1):43. PubMed ID: 35246132
    [Abstract] [Full Text] [Related]

  • 5. Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
    Bogaerts B, Van den Bossche A, Verhaegen B, Delbrassinne L, Mattheus W, Nouws S, Godfroid M, Hoffman S, Roosens NHC, De Keersmaecker SCJ, Vanneste K.
    J Clin Microbiol; 2024 May 08; 62(5):e0157623. PubMed ID: 38441926
    [Abstract] [Full Text] [Related]

  • 6. High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.
    Karst SM, Ziels RM, Kirkegaard RH, Sørensen EA, McDonald D, Zhu Q, Knight R, Albertsen M.
    Nat Methods; 2021 Feb 08; 18(2):165-169. PubMed ID: 33432244
    [Abstract] [Full Text] [Related]

  • 7. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
    Heikema AP, Horst-Kreft D, Boers SA, Jansen R, Hiltemann SD, de Koning W, Kraaij R, de Ridder MAJ, van Houten CB, Bont LJ, Stubbs AP, Hays JP.
    Genes (Basel); 2020 Sep 21; 11(9):. PubMed ID: 32967250
    [Abstract] [Full Text] [Related]

  • 8. Recovery of small plasmid sequences via Oxford Nanopore sequencing.
    Wick RR, Judd LM, Wyres KL, Holt KE.
    Microb Genom; 2021 Aug 21; 7(8):. PubMed ID: 34431763
    [Abstract] [Full Text] [Related]

  • 9. Nano-RECall provides an integrated pipeline for HIV-1 drug resistance testing from Oxford Nanopore sequence data.
    Delaney KE, Ngobeni T, Woods CK, Gordijn C, Claassen M, Parikh U, Harrigan PR, van Zyl GU.
    Trop Med Int Health; 2023 Mar 21; 28(3):186-193. PubMed ID: 36599816
    [Abstract] [Full Text] [Related]

  • 10. Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis.
    Linde J, Brangsch H, Hölzer M, Thomas C, Elschner MC, Melzer F, Tomaso H.
    BMC Genomics; 2023 May 12; 24(1):258. PubMed ID: 37173617
    [Abstract] [Full Text] [Related]

  • 11. Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes.
    Karin BR, Arellano S, Wang L, Walzer K, Pomerantz A, Vasquez JM, Chatla K, Sudmant PH, Bach BH, Smith LL, McGuire JA.
    BMC Genomics; 2023 May 02; 24(1):229. PubMed ID: 37131128
    [Abstract] [Full Text] [Related]

  • 12. Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2.
    Zee A, Deng DZQ, Adams M, Schimke KD, Corbett-Detig R, Russell SL, Zhang X, Schmitz RJ, Vollmers C.
    Genome Res; 2022 May 02; 32(11-12):2092-2106. PubMed ID: 36351772
    [Abstract] [Full Text] [Related]

  • 13. Nanopore Third-Generation Sequencing for Comprehensive Analysis of Hemoglobinopathy Variants.
    Huang W, Qu S, Qin Q, Yang X, Han W, Lai Y, Chen J, Zhou S, Yang X, Zhou W.
    Clin Chem; 2023 Sep 01; 69(9):1062-1071. PubMed ID: 37311260
    [Abstract] [Full Text] [Related]

  • 14. Complete pipeline for Oxford Nanopore Technology amplicon sequencing (ONT-AmpSeq): from pre-processing to creating an operational taxonomic unit table.
    Schacksen PS, Østergaard SK, Eskildsen MH, Nielsen JL.
    FEBS Open Bio; 2024 Aug 07. PubMed ID: 39109544
    [Abstract] [Full Text] [Related]

  • 15. Scalable, Cost-Effective, and Decentralized DNA Barcoding with Oxford Nanopore Sequencing.
    Srivathsan A, Meier R.
    Methods Mol Biol; 2024 Aug 07; 2744():223-238. PubMed ID: 38683322
    [Abstract] [Full Text] [Related]

  • 16. Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.
    Foster-Nyarko E, Cottingham H, Wick RR, Judd LM, Lam MMC, Wyres KL, Stanton TD, Tsang KK, David S, Aanensen DM, Brisse S, Holt KE.
    Microb Genom; 2023 Feb 07; 9(2):. PubMed ID: 36752781
    [Abstract] [Full Text] [Related]

  • 17. BoardION: real-time monitoring of Oxford Nanopore sequencing instruments.
    Bruno A, Aury JM, Engelen S.
    BMC Bioinformatics; 2021 May 13; 22(1):245. PubMed ID: 33985424
    [Abstract] [Full Text] [Related]

  • 18. Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads.
    Xian Z, Li S, Mann DA, Huang Y, Xu F, Wu X, Tang S, Zhang G, Stevenson A, Ge C, Deng X.
    Appl Environ Microbiol; 2022 Aug 09; 88(15):e0078522. PubMed ID: 35867567
    [Abstract] [Full Text] [Related]

  • 19. ONTbarcoder 2.0: rapid species discovery and identification with real-time barcoding facilitated by Oxford Nanopore R10.4.
    Srivathsan A, Feng V, Suárez D, Emerson B, Meier R.
    Cladistics; 2024 Apr 09; 40(2):192-203. PubMed ID: 38041646
    [Abstract] [Full Text] [Related]

  • 20. Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry.
    Dippenaar A, Costa Conceição E, Wells F, Loubser J, Mann B, De Diego Fuertes M, Rennie V, Warren RM, Van Rie A.
    PLoS One; 2024 Apr 09; 19(6):e0303938. PubMed ID: 38843147
    [Abstract] [Full Text] [Related]

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