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Journal Abstract Search

204 related items for PubMed ID: 36525308

  • 1. NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks.
    Chitra U, Park TY, Raphael BJ.
    J Comput Biol; 2022 Dec; 29(12):1305-1323. PubMed ID: 36525308
    [Abstract] [Full Text] [Related]

  • 2. Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network.
    Khunlertgit N, Yoon BJ.
    BMC Bioinformatics; 2016 Oct 06; 17(Suppl 13):351. PubMed ID: 27766944
    [Abstract] [Full Text] [Related]

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  • 4. NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks.
    Reyna MA, Chitra U, Elyanow R, Raphael BJ.
    J Comput Biol; 2021 May 06; 28(5):469-484. PubMed ID: 33400606
    [Abstract] [Full Text] [Related]

  • 5. Hierarchical HotNet: identifying hierarchies of altered subnetworks.
    Reyna MA, Leiserson MDM, Raphael BJ.
    Bioinformatics; 2018 Sep 01; 34(17):i972-i980. PubMed ID: 30423088
    [Abstract] [Full Text] [Related]

  • 6. Identification of significantly mutated subnetworks in the breast cancer genome.
    Ajwad R, Domaratzki M, Liu Q, Feizi N, Hu P.
    Sci Rep; 2021 Jan 12; 11(1):642. PubMed ID: 33436820
    [Abstract] [Full Text] [Related]

  • 7. Identification of highly synchronized subnetworks from gene expression data.
    Gao S, Wang X.
    BMC Bioinformatics; 2013 Jan 12; 14 Suppl 9(Suppl 9):S5. PubMed ID: 23901792
    [Abstract] [Full Text] [Related]

  • 8. A physarum-inspired prize-collecting steiner tree approach to identify subnetworks for drug repositioning.
    Sun Y, Hameed PN, Verspoor K, Halgamuge S.
    BMC Syst Biol; 2016 Dec 05; 10(Suppl 5):128. PubMed ID: 28105946
    [Abstract] [Full Text] [Related]

  • 9. A scalable method for discovering significant subnetworks.
    Hasan MM, Kavurucu Y, Kahveci T.
    BMC Syst Biol; 2013 Dec 05; 7 Suppl 4(Suppl 4):S3. PubMed ID: 24565174
    [Abstract] [Full Text] [Related]

  • 10. NoMAS: A Computational Approach to Find Mutated Subnetworks Associated With Survival in Genome-Wide Cancer Studies.
    Altieri F, Hansen TV, Vandin F.
    Front Genet; 2019 Dec 05; 10():265. PubMed ID: 31024613
    [Abstract] [Full Text] [Related]

  • 11. Smell Detection Agent Optimisation Framework and Systems Biology Approach to Detect Dys-Regulated Subnetwork in Cancer Data.
    Sivan SL, Sukumara Pillai VCS.
    Biomolecules; 2021 Dec 27; 12(1):. PubMed ID: 35053185
    [Abstract] [Full Text] [Related]

  • 12. Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network.
    He H, Lin D, Zhang J, Wang YP, Deng HW.
    BMC Bioinformatics; 2017 Mar 03; 18(1):149. PubMed ID: 28253853
    [Abstract] [Full Text] [Related]

  • 13. Discovery of mutated subnetworks associated with clinical data in cancer.
    Vandin F, Clay P, Upfal E, Raphael BJ.
    Pac Symp Biocomput; 2012 Mar 03; ():55-66. PubMed ID: 22174262
    [Abstract] [Full Text] [Related]

  • 14. SSGA and MSGA: two seed-growing algorithms for constructing collaborative subnetworks.
    Ji X, Chen S, Li JC, Deng W, Wei Z, Wei H.
    Sci Rep; 2017 May 03; 7(1):1446. PubMed ID: 28469138
    [Abstract] [Full Text] [Related]

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  • 16. Identification of hub subnetwork based on topological features of genes in breast cancer.
    Zhuang DY, Jiang L, He QQ, Zhou P, Yue T.
    Int J Mol Med; 2015 Mar 03; 35(3):664-74. PubMed ID: 25573623
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  • 18. BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency.
    Shi X, Wang X, Shajahan A, Hilakivi-Clarke L, Clarke R, Xuan J.
    BMC Genomics; 2015 Mar 03; 16 Suppl 7(Suppl 7):S10. PubMed ID: 26099273
    [Abstract] [Full Text] [Related]

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  • 20. An Efficient Algorithm for Identifying Mutated Subnetworks Associated with Survival in Cancer.
    Sarkar A, Atay Y, Erickson AL, Arisi I, Saltini C, Kahveci T.
    IEEE/ACM Trans Comput Biol Bioinform; 2020 Mar 03; 17(5):1582-1594. PubMed ID: 30990435
    [Abstract] [Full Text] [Related]

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