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Journal Abstract Search


114 related items for PubMed ID: 36889947

  • 1. Classification of GTP-dependent K-Ras4B active and inactive conformational states.
    Narayan B, Kiel C, Buchete NV.
    J Chem Phys; 2023 Mar 07; 158(9):091104. PubMed ID: 36889947
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  • 2. The Structural Basis of Oncogenic Mutations G12, G13 and Q61 in Small GTPase K-Ras4B.
    Lu S, Jang H, Nussinov R, Zhang J.
    Sci Rep; 2016 Feb 23; 6():21949. PubMed ID: 26902995
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  • 3. GTP Binding and Oncogenic Mutations May Attenuate Hypervariable Region (HVR)-Catalytic Domain Interactions in Small GTPase K-Ras4B, Exposing the Effector Binding Site.
    Lu S, Banerjee A, Jang H, Zhang J, Gaponenko V, Nussinov R.
    J Biol Chem; 2015 Nov 27; 290(48):28887-900. PubMed ID: 26453300
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  • 6. Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations.
    Castelli M, Marchetti F, Osuna S, F Oliveira AS, Mulholland AJ, Serapian SA, Colombo G.
    J Am Chem Soc; 2024 Jan 10; 146(1):901-919. PubMed ID: 38116743
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  • 7. Autopromotion of K-Ras4B Feedback Activation Through an SOS-Mediated Long-Range Allosteric Effect.
    He X, Du K, Wang Y, Fan J, Li M, Ni D, Lu S, Bian X, Liu Y.
    Front Mol Biosci; 2022 Jan 10; 9():860962. PubMed ID: 35463958
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  • 10. Markov State Models and Molecular Dynamics Simulations Reveal the Conformational Transition of the Intrinsically Disordered Hypervariable Region of K-Ras4B to the Ordered Conformation.
    Zhang H, Ni D, Fan J, Li M, Zhang J, Hua C, Nussinov R, Lu S.
    J Chem Inf Model; 2022 Sep 12; 62(17):4222-4231. PubMed ID: 35994329
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  • 11. Membrane Composition and Raf[CRD]-Membrane Attachment Are Driving Forces for K-Ras4B Dimer Stability.
    Andreadelis I, Kiriakidi S, Lamprakis C, Theodoropoulou A, Doerr S, Chatzigoulas A, Manchester J, Velez-Vega C, Duca JS, Cournia Z.
    J Phys Chem B; 2022 Feb 24; 126(7):1504-1519. PubMed ID: 35142524
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  • 12. Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling.
    Dudas B, Merzel F, Jang H, Nussinov R, Perahia D, Balog E.
    Front Mol Biosci; 2020 Feb 24; 7():145. PubMed ID: 32754617
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  • 13. Mutation-Induced Impacts on the Switch Transformations of the GDP- and GTP-Bound K-Ras: Insights from Multiple Replica Gaussian Accelerated Molecular Dynamics and Free Energy Analysis.
    Chen J, Zhang S, Wang W, Pang L, Zhang Q, Liu X.
    J Chem Inf Model; 2021 Apr 26; 61(4):1954-1969. PubMed ID: 33739090
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  • 14. Computational Design of Myristoylated Cell-Penetrating Peptides Targeting Oncogenic K-Ras.G12D at the Effector-Binding Membrane Interface.
    Li Z, Buck M.
    J Chem Inf Model; 2020 Jan 27; 60(1):306-315. PubMed ID: 31855604
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  • 15. The role of conserved waters in conformational transitions of Q61H K-ras.
    Prakash P, Sayyed-Ahmad A, Gorfe AA.
    PLoS Comput Biol; 2012 Jan 27; 8(2):e1002394. PubMed ID: 22359497
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  • 17. Structure of an inactive conformation of GTP-bound RhoA GTPase.
    Lin Y, Lu S, Zhang J, Zheng Y.
    Structure; 2021 Jun 03; 29(6):553-563.e5. PubMed ID: 33497604
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