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Journal Abstract Search

177 related items for PubMed ID: 37259021

  • 1. Accelerating genomic workflows using NVIDIA Parabricks.
    O'Connell KA, Yosufzai ZB, Campbell RA, Lobb CJ, Engelken HT, Gorrell LM, Carlson TB, Catana JJ, Mikdadi D, Bonazzi VR, Klenk JA.
    BMC Bioinformatics; 2023 May 31; 24(1):221. PubMed ID: 37259021
    [Abstract] [Full Text] [Related]

  • 2. A hybrid computational strategy to address WGS variant analysis in >5000 samples.
    Huang Z, Rustagi N, Veeraraghavan N, Carroll A, Gibbs R, Boerwinkle E, Venkata MG, Yu F.
    BMC Bioinformatics; 2016 Sep 10; 17(1):361. PubMed ID: 27612449
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  • 3. Accelerating Minimap2 for Accurate Long Read Alignment on GPUs.
    Sadasivan H, Maric M, Dawson E, Iyer V, Israeli J, Narayanasamy S.
    J Biotechnol Biomed; 2023 Sep 10; 6(1):13-23. PubMed ID: 36937168
    [Abstract] [Full Text] [Related]

  • 4. Benchmarking variant callers in next-generation and third-generation sequencing analysis.
    Pei S, Liu T, Ren X, Li W, Chen C, Xie Z.
    Brief Bioinform; 2021 May 20; 22(3):. PubMed ID: 32698196
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  • 6. Multi-GPU Jacobian accelerated computing for soft-field tomography.
    Borsic A, Attardo EA, Halter RJ.
    Physiol Meas; 2012 Oct 20; 33(10):1703-15. PubMed ID: 23010857
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  • 7. Large-scale neural circuit mapping data analysis accelerated with the graphical processing unit (GPU).
    Shi Y, Veidenbaum AV, Nicolau A, Xu X.
    J Neurosci Methods; 2015 Jan 15; 239():1-10. PubMed ID: 25277633
    [Abstract] [Full Text] [Related]

  • 8. GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering.
    Suzuki S, Kakuta M, Ishida T, Akiyama Y.
    PLoS One; 2016 Jan 15; 11(8):e0157338. PubMed ID: 27482905
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  • 10. A graphical, interactive and GPU-enabled workflow to process long-read sequencing data.
    Reddy S, Hung LH, Sala-Torra O, Radich JP, Yeung CC, Yeung KY.
    BMC Genomics; 2021 Aug 23; 22(1):626. PubMed ID: 34425749
    [Abstract] [Full Text] [Related]

  • 11. High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.
    Samant SS, Xia J, Muyan-Ozcelik P, Owens JD.
    Med Phys; 2008 Aug 23; 35(8):3546-53. PubMed ID: 18777915
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  • 13. GPU-accelerated multitiered iterative phasing algorithm for fluctuation X-ray scattering.
    Kommera PR, Ramakrishnaiah V, Sweeney C, Donatelli J, Zwart PH.
    J Appl Crystallogr; 2021 Aug 01; 54(Pt 4):1179-1188. PubMed ID: 34429723
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  • 15. VC@Scale: Scalable and high-performance variant calling on cluster environments.
    Ahmad T, Al Ars Z, Hofstee HP.
    Gigascience; 2021 Sep 07; 10(9):. PubMed ID: 34494101
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  • 18. Transcriptome annotation in the cloud: complexity, best practices, and cost.
    Alvarez RV, Mariño-Ramírez L, Landsman D.
    Gigascience; 2021 Jan 29; 10(2):. PubMed ID: 33511996
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  • 20. Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays.
    Krishnan V, Utiramerur S, Ng Z, Datta S, Snyder MP, Ashley EA.
    BMC Bioinformatics; 2021 Feb 24; 22(1):85. PubMed ID: 33627090
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