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Journal Abstract Search

192 related items for PubMed ID: 37450163

  • 1. Protein-Protein Interaction Network Exploration Using Cytoscape.
    Majeed A, Mukhtar S.
    Methods Mol Biol; 2023; 2690():419-427. PubMed ID: 37450163
    [Abstract] [Full Text] [Related]

  • 2. Visualization of protein interaction networks: problems and solutions.
    Agapito G, Guzzi PH, Cannataro M.
    BMC Bioinformatics; 2013; 14 Suppl 1(Suppl 1):S1. PubMed ID: 23368786
    [Abstract] [Full Text] [Related]

  • 3. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
    Doncheva NT, Morris JH, Gorodkin J, Jensen LJ.
    J Proteome Res; 2019 Feb 01; 18(2):623-632. PubMed ID: 30450911
    [Abstract] [Full Text] [Related]

  • 4. XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
    Lima DB, Zhu Y, Liu F.
    J Proteome Res; 2021 Apr 02; 20(4):1943-1950. PubMed ID: 33689356
    [Abstract] [Full Text] [Related]

  • 5. Visualize omics data on networks with Omics Visualizer, a Cytoscape App.
    Legeay M, Doncheva NT, Morris JH, Jensen LJ.
    F1000Res; 2020 Apr 02; 9():157. PubMed ID: 32399202
    [Abstract] [Full Text] [Related]

  • 6. ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks.
    Li G, Li M, Zhang Y, Wang D, Li R, Guimerà R, Gao JT, Zhang MQ.
    PLoS One; 2014 Apr 02; 9(5):e94608. PubMed ID: 24788790
    [Abstract] [Full Text] [Related]

  • 7. Building Protein-Protein Interaction Graph Database Using Neo4j.
    Kumar N, Mukhtar S.
    Methods Mol Biol; 2023 Apr 02; 2690():469-479. PubMed ID: 37450167
    [Abstract] [Full Text] [Related]

  • 8. Exploratory Analysis of Biological Networks through Visualization, Clustering, and Functional Annotation in Cytoscape.
    Baryshnikova A.
    Cold Spring Harb Protoc; 2016 Jun 01; 2016(6):. PubMed ID: 26988373
    [Abstract] [Full Text] [Related]

  • 9. Biological network exploration with Cytoscape 3.
    Su G, Morris JH, Demchak B, Bader GD.
    Curr Protoc Bioinformatics; 2014 Sep 08; 47():8.13.1-24. PubMed ID: 25199793
    [Abstract] [Full Text] [Related]

  • 10. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of protein interaction networks.
    Tang Y, Li M, Wang J, Pan Y, Wu FX.
    Biosystems; 2015 Jan 08; 127():67-72. PubMed ID: 25451770
    [Abstract] [Full Text] [Related]

  • 11. Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era.
    Praneenararat T, Takagi T, Iwasaki W.
    BMC Genomics; 2012 Jan 08; 13 Suppl 7(Suppl 7):S24. PubMed ID: 23281970
    [Abstract] [Full Text] [Related]

  • 12. Development and use of a Cytoscape app for GRNCOP2.
    Díaz-Montaña JJ, Díaz-Díaz N, Barranco CD, Ponzoni I.
    Comput Methods Programs Biomed; 2019 Aug 08; 177():211-218. PubMed ID: 31319950
    [Abstract] [Full Text] [Related]

  • 13. NCMine: Core-peripheral based functional module detection using near-clique mining.
    Tadaka S, Kinoshita K.
    Bioinformatics; 2016 Nov 15; 32(22):3454-3460. PubMed ID: 27466623
    [Abstract] [Full Text] [Related]

  • 14.
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    [No Abstract] [Full Text] [Related]

  • 15. KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.
    Alcaraz N, Pauling J, Batra R, Barbosa E, Junge A, Christensen AG, Azevedo V, Ditzel HJ, Baumbach J.
    BMC Syst Biol; 2014 Aug 19; 8():99. PubMed ID: 25134827
    [Abstract] [Full Text] [Related]

  • 16. Search, Retrieve, Visualize, and Analyze Protein-Protein Interactions from Multiple Databases: A Guide for Experimental Biologists.
    Muley VY.
    Methods Mol Biol; 2023 Aug 19; 2690():429-443. PubMed ID: 37450164
    [Abstract] [Full Text] [Related]

  • 17. Discerning molecular interactions: A comprehensive review on biomolecular interaction databases and network analysis tools.
    Miryala SK, Anbarasu A, Ramaiah S.
    Gene; 2018 Feb 05; 642():84-94. PubMed ID: 29129810
    [Abstract] [Full Text] [Related]

  • 18. Analysis and Visualization of Dynamic Networks Using the DyNet App for Cytoscape.
    Salamon J, Goenawan IH, Lynn DJ.
    Curr Protoc Bioinformatics; 2018 Sep 05; 63(1):e55. PubMed ID: 30168906
    [Abstract] [Full Text] [Related]

  • 19. CyToStruct: Augmenting the Network Visualization of Cytoscape with the Power of Molecular Viewers.
    Nepomnyachiy S, Ben-Tal N, Kolodny R.
    Structure; 2015 May 05; 23(5):941-948. PubMed ID: 25865247
    [Abstract] [Full Text] [Related]

  • 20. Visualization and analysis of biological networks.
    Millán PP.
    Methods Mol Biol; 2013 May 05; 1021():63-88. PubMed ID: 23715980
    [Abstract] [Full Text] [Related]

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