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Journal Abstract Search

231 related items for PubMed ID: 37532987

  • 1. Molecular complex detection in protein interaction networks through reinforcement learning.
    Palukuri MV, Patil RS, Marcotte EM.
    BMC Bioinformatics; 2023 Aug 02; 24(1):306. PubMed ID: 37532987
    [Abstract] [Full Text] [Related]

  • 2. Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.
    Palukuri MV, Marcotte EM.
    PLoS One; 2021 Aug 02; 16(12):e0262056. PubMed ID: 34972161
    [Abstract] [Full Text] [Related]

  • 3. Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.
    Palukuri MV, Marcotte EM.
    bioRxiv; 2021 Oct 11. PubMed ID: 34189530
    [Abstract] [Full Text] [Related]

  • 4. Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.
    Liu X, Yang Z, Sang S, Zhou Z, Wang L, Zhang Y, Lin H, Wang J, Xu B.
    BMC Bioinformatics; 2018 Sep 21; 19(1):332. PubMed ID: 30241459
    [Abstract] [Full Text] [Related]

  • 5. Protein Complexes Detection Based on Semi-Supervised Network Embedding Model.
    Zhu J, Zheng Z, Yang M, Fung GPC, Huang C.
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Sep 21; 18(2):797-803. PubMed ID: 31581089
    [Abstract] [Full Text] [Related]

  • 6. Detection of Complexes in Biological Networks Through Diversified Dense Subgraph Mining.
    Ma X, Zhou G, Shang J, Wang J, Peng J, Han J.
    J Comput Biol; 2017 Sep 21; 24(9):923-941. PubMed ID: 28570104
    [Abstract] [Full Text] [Related]

  • 7. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.
    Xu B, Guan J.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Sep 21; 11(4):616-27. PubMed ID: 26356332
    [Abstract] [Full Text] [Related]

  • 8. DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding.
    Meng X, Xiang J, Zheng R, Wu FX, Li M.
    IEEE/ACM Trans Comput Biol Bioinform; 2022 Sep 21; 19(3):1592-1602. PubMed ID: 33417563
    [Abstract] [Full Text] [Related]

  • 9. A supervised protein complex prediction method with network representation learning and gene ontology knowledge.
    Wang X, Zhang Y, Zhou P, Liu X.
    BMC Bioinformatics; 2022 Jul 25; 23(1):300. PubMed ID: 35879648
    [Abstract] [Full Text] [Related]

  • 10. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
    Ou-Yang L, Yan H, Zhang XF.
    BMC Bioinformatics; 2017 Dec 01; 18(Suppl 13):463. PubMed ID: 29219066
    [Abstract] [Full Text] [Related]

  • 11. From communities to protein complexes: A local community detection algorithm on PPI networks.
    Dilmaghani S, Brust MR, Ribeiro CHC, Kieffer E, Danoy G, Bouvry P.
    PLoS One; 2022 Dec 01; 17(1):e0260484. PubMed ID: 35085263
    [Abstract] [Full Text] [Related]

  • 12. Protein complex prediction via dense subgraphs and false positive analysis.
    Hernandez C, Mella C, Navarro G, Olivera-Nappa A, Araya J.
    PLoS One; 2017 Dec 01; 12(9):e0183460. PubMed ID: 28937982
    [Abstract] [Full Text] [Related]

  • 13. Predicting protein complexes using a supervised learning method combined with local structural information.
    Dong Y, Sun Y, Qin C.
    PLoS One; 2018 Dec 01; 13(3):e0194124. PubMed ID: 29554120
    [Abstract] [Full Text] [Related]

  • 14. Supervised maximum-likelihood weighting of composite protein networks for complex prediction.
    Yong CH, Liu G, Chua HN, Wong L.
    BMC Syst Biol; 2012 Dec 01; 6 Suppl 2(Suppl 2):S13. PubMed ID: 23281936
    [Abstract] [Full Text] [Related]

  • 15. Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.
    He J, Li C, Ye B, Zhong W.
    BMC Bioinformatics; 2012 Jun 25; 13 Suppl 10(Suppl 10):S19. PubMed ID: 22759424
    [Abstract] [Full Text] [Related]

  • 16. Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure.
    Peng W, Wang J, Zhao B, Wang L.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Jun 25; 12(1):179-92. PubMed ID: 26357088
    [Abstract] [Full Text] [Related]

  • 17. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering.
    Theofilatos K, Pavlopoulou N, Papasavvas C, Likothanassis S, Dimitrakopoulos C, Georgopoulos E, Moschopoulos C, Mavroudi S.
    Artif Intell Med; 2015 Mar 25; 63(3):181-9. PubMed ID: 25765008
    [Abstract] [Full Text] [Related]

  • 18. Identification of protein complexes by integrating multiple alignment of protein interaction networks.
    Ma CY, Chen YP, Berger B, Liao CS.
    Bioinformatics; 2017 Jun 01; 33(11):1681-1688. PubMed ID: 28130237
    [Abstract] [Full Text] [Related]

  • 19. Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy.
    Chen B, Shi J, Zhang S, Wu FX.
    Proteomics; 2013 Jan 01; 13(2):269-77. PubMed ID: 23112006
    [Abstract] [Full Text] [Related]

  • 20. Decision tree classifier based on topological characteristics of subgraph for the mining of protein complexes from large scale PPI networks.
    Sahoo TR, Patra S, Vipsita S.
    Comput Biol Chem; 2023 Oct 01; 106():107935. PubMed ID: 37536230
    [Abstract] [Full Text] [Related]

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