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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

135 related items for PubMed ID: 37595778

  • 1. SBcoyote: An extensible Python-based reaction editor and viewer.
    Xu J, Geng G, Nguyen ND, Perena-Cortes C, Samuels C, Sauro HM.
    Biosystems; 2023 Oct; 232():105001. PubMed ID: 37595778
    [Abstract] [Full Text] [Related]

  • 2. SBcoyote: An Extensible Python-Based Reaction Editor and Viewer.
    Xu J, Geng G, Nguyen ND, Perena-Cortes C, Samuels C, Sauro HM.
    ArXiv; 2023 Aug 14. PubMed ID: 37645048
    [Abstract] [Full Text] [Related]

  • 3. SBMLDiagrams: a python package to process and visualize SBML layout and render.
    Xu J, Jiang J, Sauro HM.
    Bioinformatics; 2023 Jan 01; 39(1):. PubMed ID: 36370074
    [Abstract] [Full Text] [Related]

  • 4. MINERVA API and plugins: opening molecular network analysis and visualization to the community.
    Hoksza D, Gawron P, Ostaszewski M, Smula E, Schneider R.
    Bioinformatics; 2019 Nov 01; 35(21):4496-4498. PubMed ID: 31074494
    [Abstract] [Full Text] [Related]

  • 5. Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
    Silberberg M, Hermjakob H, Malik-Sheriff RS, Grecco HE.
    Bioinformatics; 2024 Aug 02; 40(8):. PubMed ID: 39078116
    [Abstract] [Full Text] [Related]

  • 6. MakeSBML: a tool for converting between Antimony and SBML.
    Jardine BE, Smith LP, Sauro HM.
    J Integr Bioinform; 2024 Mar 01; 21(1):. PubMed ID: 38860571
    [Abstract] [Full Text] [Related]

  • 7. A portable structural analysis library for reaction networks.
    Bedaso Y, Bergmann FT, Choi K, Medley K, Sauro HM.
    Biosystems; 2018 Jul 01; 169-170():20-25. PubMed ID: 29857031
    [Abstract] [Full Text] [Related]

  • 8. Tellurium: An extensible python-based modeling environment for systems and synthetic biology.
    Choi K, Medley JK, König M, Stocking K, Smith L, Gu S, Sauro HM.
    Biosystems; 2018 Sep 01; 171():74-79. PubMed ID: 30053414
    [Abstract] [Full Text] [Related]

  • 9. CySBML: a Cytoscape plugin for SBML.
    König M, Dräger A, Holzhütter HG.
    Bioinformatics; 2012 Sep 15; 28(18):2402-3. PubMed ID: 22772946
    [Abstract] [Full Text] [Related]

  • 10. MakeSBML: A tool for converting between Antimony and SBML.
    Jardine BE, Smith LP, Sauro HM.
    ArXiv; 2023 Sep 06. PubMed ID: 37731653
    [Abstract] [Full Text] [Related]

  • 11. Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python.
    Lubbock ALR, Lopez CF.
    Bioinformatics; 2022 Oct 14; 38(20):4823-4825. PubMed ID: 36000837
    [Abstract] [Full Text] [Related]

  • 12. Biographer: web-based editing and rendering of SBGN compliant biochemical networks.
    Krause F, Schulz M, Ripkens B, Flöttmann M, Krantz M, Klipp E, Handorf T.
    Bioinformatics; 2013 Jun 01; 29(11):1467-8. PubMed ID: 23574737
    [Abstract] [Full Text] [Related]

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  • 15. An Update to the SBML Human-Readable Antimony Language.
    Smith L, Sauro HM.
    ArXiv; 2024 May 23. PubMed ID: 38827452
    [Abstract] [Full Text] [Related]

  • 16. libRoadRunner 2.0: a high performance SBML simulation and analysis library.
    Welsh C, Xu J, Smith L, König M, Choi K, Sauro HM.
    Bioinformatics; 2023 Jan 01; 39(1):. PubMed ID: 36478036
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  • 19. VSCode-Antimony: a source editor for building, analyzing, and translating antimony models.
    Ma S, Fan L, Konanki SA, Liu E, Gennari JH, Smith LP, Hellerstein JL, Sauro HM.
    Bioinformatics; 2023 Dec 01; 39(12):. PubMed ID: 38096590
    [Abstract] [Full Text] [Related]

  • 20. libRoadRunner: a high performance SBML simulation and analysis library.
    Somogyi ET, Bouteiller JM, Glazier JA, König M, Medley JK, Swat MH, Sauro HM.
    Bioinformatics; 2015 Oct 15; 31(20):3315-21. PubMed ID: 26085503
    [Abstract] [Full Text] [Related]

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