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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

522 related items for PubMed ID: 37800969

  • 1. The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.
    Zhang T, Li H, Ma S, Cao J, Liao H, Huang Q, Chen W.
    Appl Environ Microbiol; 2023 Oct 31; 89(10):e0060523. PubMed ID: 37800969
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  • 4. High accuracy meets high throughput for near full-length 16S ribosomal RNA amplicon sequencing on the Nanopore platform.
    Lin X, Waring K, Ghezzi H, Tropini C, Tyson J, Ziels RM.
    PNAS Nexus; 2024 Oct 31; 3(10):pgae411. PubMed ID: 39386005
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  • 6. Microbial Community Profiling Protocol with Full-length 16S rRNA Sequences and Emu.
    Curry KD, Soriano S, Nute MG, Villapol S, Dilthey A, Treangen TJ.
    Curr Protoc; 2024 Mar 31; 4(3):e978. PubMed ID: 38511467
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  • 7. Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction.
    Sanderson ND, Kapel N, Rodger G, Webster H, Lipworth S, Street TL, Peto T, Crook D, Stoesser N.
    Microb Genom; 2023 Jan 31; 9(1):. PubMed ID: 36748454
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  • 8. A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes.
    Nygaard AB, Tunsjø HS, Meisal R, Charnock C.
    Sci Rep; 2020 Feb 21; 10(1):3209. PubMed ID: 32081924
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  • 10. Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data.
    Curry KD, Wang Q, Nute MG, Tyshaieva A, Reeves E, Soriano S, Wu Q, Graeber E, Finzer P, Mendling W, Savidge T, Villapol S, Dilthey A, Treangen TJ.
    Nat Methods; 2022 Jul 21; 19(7):845-853. PubMed ID: 35773532
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  • 11. NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.
    Calus ST, Ijaz UZ, Pinto AJ.
    Gigascience; 2018 Dec 01; 7(12):. PubMed ID: 30476081
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  • 12. A comparison between full-length 16S rRNA Oxford nanopore sequencing and Illumina V3-V4 16S rRNA sequencing in head and neck cancer tissues.
    Yeo K, Connell J, Bouras G, Smith E, Murphy W, Hodge JC, Krishnan S, Wormald PJ, Valentine R, Psaltis AJ, Vreugde S, Fenix KA.
    Arch Microbiol; 2024 May 07; 206(6):248. PubMed ID: 38713383
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  • 14. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL, Watson M, Minot SS, Rivera MC, Franklin RB.
    Gigascience; 2017 Mar 01; 6(3):1-10. PubMed ID: 28327976
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  • 15. Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the  rrn operon.
    Cuscó A, Catozzi C, Viñes J, Sanchez A, Francino O.
    F1000Res; 2018 Mar 01; 7():1755. PubMed ID: 30815250
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  • 16. Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution.
    Matsuo Y, Komiya S, Yasumizu Y, Yasuoka Y, Mizushima K, Takagi T, Kryukov K, Fukuda A, Morimoto Y, Naito Y, Okada H, Bono H, Nakagawa S, Hirota K.
    BMC Microbiol; 2021 Jan 26; 21(1):35. PubMed ID: 33499799
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  • 18. Species-specific basecallers improve actual accuracy of nanopore sequencing in plants.
    Ferguson S, McLay T, Andrew RL, Bruhl JJ, Schwessinger B, Borevitz J, Jones A.
    Plant Methods; 2022 Dec 14; 18(1):137. PubMed ID: 36517904
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  • 19. Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer.
    Benítez-Páez A, Portune KJ, Sanz Y.
    Gigascience; 2016 Dec 14; 5():4. PubMed ID: 26823973
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